Published December 31, 2020
| Version v1
Journal article
Restricted
Mobilization of storage lipid reserve and expression analysis of lipase and lipoxygenase genes in rice (Oryza sativa var. Pusa Basmati 1) bran during germination
Authors/Creators
- 1. * & National Agri-Food Biotechnology Institute (NABI), Plant Tissue Culture and Genetic Engineering, Mohali, 140306, Punjab, India
Description
Sinha, Kshitija, Kaur, Ranjeet, Singh, Nishu, Kaur, Sumandeep, Rishi, Vikas, Bhunia, Rupam Kumar (2020): Mobilization of storage lipid reserve and expression analysis of lipase and lipoxygenase genes in rice (Oryza sativa var. Pusa Basmati 1) bran during germination. Phytochemistry (112538) 180: 1-12, DOI: 10.1016/j.phytochem.2020.112538, URL: http://dx.doi.org/10.1016/j.phytochem.2020.112538
Files
Restricted
The record is publicly accessible, but files are restricted. <a href="https://zenodo.org/account/settings/login?next=https://zenodo.org/records/8292656">Log in</a> to check if you have access.
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:635FFFC054234C34FF91FFEAA01B3E2D
References
- Amarasinghe, B.M.W.P.K., Kumarasiri, M.P.M., Gangodavilage, N.C., 2009. Effect of method of stabilization on aqueous extraction of rice bran oil. Food Bioprod. Process. 87, 108-114. https://doi.org/10.1016/j.fbp.2008.08.002.
- Bailey, T.L., Williams, N., Misleh, C., Li, W.W., 2006. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 34 https://doi.org/10.1093/ nar/gkl198.
- Bannenberg, G., Martinez, M., Hamberg, M., Castresana, C., 2009. Diversity of the enzymatic activity in the lipoxygenase gene family of arabidopsis thaliana. Lipids 44, 85-95. https://doi.org/10.1007/s11745-008-3245-7.
- Bhunia, R.K., Chakraborty, A., Kaur, R., Maiti, M.K., Sen, S.K., 2016. Enhancement of α- linolenic acid content in transgenic tobacco seeds by targeting a plastidial ω-3 fatty acid desaturase (fad7) gene of Sesamum indicum to ER. Plant Cell Rep. 35, 213-226. https://doi.org/10.1007/s00299-015-1880-z.
- Borek, S., Ratajczak, W., Ratajczak, L., 2015. Regulation of storage lipid metabolism in developing and germinating lupin (Lupinus spp.) seeds. Acta Physiol. Plant. 37, 119. https://doi.org/10.1007/s11738-015-1871-2.
- Borek, Sl, Ratajczak, L., 2010. Storage lipids as a source of carbon skeletons for asparagine synthesis in germinating seeds of yellow lupine (Lupinus luteus L.). J. Plant Physiol. 167, 717-724. https://doi.org/10.1016/j.jplph.2009.12.010.
- Brash, A.R., 1999. Lipoxygenases: occurrence, functions, catalysis, and acquisition of substrate. J. Biol. Chem. 274, 23679-23682. https://doi.org/10.1074/ jbc.274.34.23679.
- Burlando, B., Cornara, L., 2014. Therapeutic properties of rice constituents and derivatives (Oryza sativa L.): a review update. Trends Food Sci. Technol. 40, 82-98. https://doi.org/10.1016/j.tifs.2014.08.002.
- Chen, Z., Chen, X., Yan, H., Li, W., Li, Y., Cai, R., Xiang, Y., 2015. The Lipoxygenase gene family in poplar: identification, classification, and expression in response to MeJA treatment. PloS One 10. https://doi.org/10.1371/journal.pone.0125526.
- Chuang, R.L.C., Chen, J.C.F., Chu, J., Tzen, J.T.C., 1996. Characterization of seed oil bodies and their surface oleosin isoforms from rice embryos. J. Biochem. 120, 74-81. https://doi.org/10.1093/oxfordjournals.jbchem.a021396.
- Dunford, N.T., 2019. Chemistry of rice bran oil. In: Rice Bran and Rice Bran Oil. AOCS Press, pp. 1-18.
- Feussner, I., Wasternack, C., 2002. The lipoxygenase pathway. Annu. Rev. Plant Biol. 53, 275-297. https://doi.org/10.1146/annurev.arplant.53.100301.135248.
- Goffman, F.D., Pinson, S., Bergman, C., 2003. Genetic diversity for lipid content and fatty acid profile in rice bran. JAOCS, J. Am. Oil Chem. Soc. 80, 485-490. https://doi.org/ 10.1007/s11746-003-0725-x.
- Graham, I.A., 2008. Seed storage oil mobilization. Annu. Rev. Plant Biol. 59, 115-142. https://doi.org/10.1146/annurev.arplant.59.032607.092938.
- Gul, K., Yousuf, B., Singh, A.K., Singh, P., Wani, A.A., 2015. Rice bran: nutritional values and its emerging potential for development of functional food - a review. Bioact. Carbohydrates Diet. Fibre. 6, 24-30. https://doi.org/10.1016/j.bcdf.2015.06.002.
- Hall, B.G., 2013. Building phylogenetic trees from molecular data with MEGA. Mol. Biol. Evol. 30, 1229-1235. https://doi.org/10.1093/molbev/mst012.
- Hu, B., Jin, J., Guo, A.Y., Zhang, H., Luo, J., Gao, G., 2015. GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics 31, 1296-1297. https://doi.org/ 10.1093/bioinformatics/btu817.
- Ichihara, K., Kobayashi, N., Saito, K., 2003. Lipid synthesis and acyl-CoA synthetase in developing rice seeds. Lipids 38, 881-884. https://doi.org/10.1007/s11745-003- 1139-0.
- Juliano, B.O., Tuatno, A.P.P., 2019. Gross structure and composition of the rice grain. Rice, pp. 31-53. https://doi.org/10.1016/b978-0-12-811508-4.00002-2.
- Kawahara, Y., de la Bastide, M., Hamilton, J.P., Kanamori, H., Mccombie, W.R., Ouyang, S., Schwartz, D.C., Tanaka, T., Wu, J., Zhou, S., Childs, K.L., Davidson, R. M., Lin, H., Quesada-Ocampo, L., Vaillancourt, B., Sakai, H., Lee, S.S., Kim, J., Numa, H., Itoh, T., Buell, C.R., Matsumoto, T., 2013. Improvement of the oryza sativa nipponbare reference genome using next generation sequence and optical map data. Rice 6, 3-10. https://doi.org/10.1186/1939-8433-6-4.
- Khan, F.I., Lan, D., Durrani, R., Huan, W., Zhao, Z., Wang, Y., 2017. The lid domain in lipases: structural and functional determinant of enzymatic properties. Front. Bioeng. Biotechnol 5, 16. https://doi.org/10.3389/fbioe.2017.00016.
- Kumar, S., Stecher, G., Li, M., Knyaz, C., Tamura, K., 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol. Biol. Evol. 35, 1547-1549. https://doi.org/10.1093/molbev/msy096.
- Livak, K.J., Schmittgen, T.D., 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods 25, 402-408. https://doi. org/10.1006/meth.2001.1262.
- Ma, L., Zhu, F., Li, Z., Zhang, J., Li, X., Dong, J., Wang, T., 2015. TALEN-Based mutagenesis of lipoxygenase LOX3 enhances the storage tolerance of rice (Oryza sativa) Seeds. PloS One 10. https://doi.org/10.1371/journal.pone.0143877.
- Malekian, F., Rao, R.M., Prinyawiwatkul, W., Marshall, W.E., Windhauser, M., Ahmedna, M., 2000. Lipase and Lipoxygenase Activity, Functionality, and Nutrient Losses in Rice Bran during Storage. Louisiana State Univ. Agric. Cent. https://doi. org/10.1002/fsn3.86.
- Porta, H., Rocha-Sosa, M., 2002. Plant lipoxygenases. Physiological and molecular features. Plant Physiol 130, 15-21. https://doi.org/10.1104/pp.010787.
- Rondanini, D.P., Borr´as, L., Savin, R., 2019. Improving grain quality in oil and cereal crops. In: Meyers, R. (Ed.), Encyclopedia of Sustainability Science and Technology. Springer, New York, NY.
- RoyChowdhury, M., Li, X., Qi, H., Li, W., Sun, J., Huang, C., Wu, D., 2016. Functional characterization of 9-/13-LOXs in rice and silencing their expressions to improve grain qualities. BioMed Res. Int. 2016, 4275904 https://doi.org/10.1155/2016/ 4275904.
- Schaffrath, U., Zabbai, F., Dudler, R., 2000. Characterization of RCI-1, a chloroplastic rice lipoxygenase whose synthesis is induced by chemical plant resistance activators. Eur. J. Biochem. 267, 5935-5942. https://doi.org/10.1046/j.1432- 1327.2000.01660.x.
- Shirasawa, K., Takeuchi, Y., Ebitani, T., Suzuki, Y., 2008. Identification of gene for rice (Oryza sativa) seed lipoxygenase-3 involved in the generation of stale flavor and development of SNP markers for lipoxygenase-3 deficiency. Breed Sci. 58, 169-176. https://doi.org/10.1270/jsbbs.58.169.
- Shrestha, P., Callahan, D.L., Singh, S.P., Petrie, J.R., Zhou, X.R., 2016. Reduced triacylglycerol mobilization during seed germination and early seedling growth in Arabidopsis containing nutritionally important polyunsaturated fatty acids. Front. Plant Sci. 7 https://doi.org/10.3389/fpls.2016.01402.
- Sigrist, C.J.A., De Castro, E., Cerutti, L., Cuche, B.A., Hulo, N., Bridge, A., Bougueleret, L., Xenarios, I., 2013. New and continuing developments at PROSITE. Nucleic Acids Res. 41 https://doi.org/10.1093/nar/gks1067.
- Steczko, J., Donoho, G.P., Axelrod, B., Clemens, J.C., Dixon, J.E., 1992. Conserved histidine residues in soybean lipoxygenase: functional consequences of their replacement. Biochemistry 31, 4053-4057. https://doi.org/10.1021/bi00131a022.
- Thazar-Poulot, N., Miquel, M., Fobis-Loisy, I., Gaude, T., 2015. Peroxisome extensions deliver the Arabidopsis SDP1 lipase to oil bodies. Proc. Natl. Acad. Sci. U. S. A 112, 4158-4163. https://doi.org/10.1073/pnas.1403322112.
- Tiwari, G.J., Chiang, M.Y., De Silva, J.R., Song, B.K., Lau, Y.L., Rahman, S., 2016. Lipase genes expressed in rice bran: LOC_Os11g43510 encodes a novel rice lipase. J. Cereal. Sci. 71, 43-52. https://doi.org/10.1016/j.jcs.2016.07.008.
- Vijayakumar, K.R., Gowda, L.R., 2012. Temporal expression profiling of lipase during germination and rice caryopsis development. Plant Physiol. Biochem. 57, 245-253. https://doi.org/10.1016/j.plaphy.2012.05.028.
- Viswanath, K.K., Varakumar, P., Pamuru, R.R., Basha, S.J., Mehta, S., Rao, A.D., 2020. Plant lipoxygenases and their role in plant physiology. J. Plant Biol. 63, 83-95. https://doi.org/10.1007/s12374-020-09241-x.
- Xu, H., Wei, Y., Zhu, Y., Lian, L., Xie, Hongguang, Cai, Q., Chen, Q., Lin, Z., Wang, Z., Xie, Huaan, Zhang, J., 2015. Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity. Plant Biotechnol. J. 13, 526-539. https://doi. org/10.1111/pbi.12277.