Published March 31, 2021
| Version v1
Journal article
Restricted
Association analysis and molecular tagging of phytochemicals in the endangered medicinal plant licorice (Glycyrrhiza glabra L.)
Authors/Creators
- 1. * & Agricultural Biotechnology Research Institute of Iran - Isfahan Branch, Agricultural Research, Education and Extension Organization (AREEO), P.O. Box 85135-487, & Department of Horticultural Science, Faculty of Agriculture, University of Hormozgan, P.O.Box, 3995, Bandar Abbas, Iran
Description
Hosseini, Marjan Sadat, Ebrahimi, Morteza, Samsampour, Davood, Abadía, Javier, Khanahmadi, Morteza, Amirian, Rasool, Ghafoori, Iman Naseh, Ghaderi-Zefrehei, Mostafa, Gogorcena, Yolanda (2021): Association analysis and molecular tagging of phytochemicals in the endangered medicinal plant licorice (Glycyrrhiza glabra L.). Phytochemistry (112629) 183: 1-11, DOI: 10.1016/j.phytochem.2020.112629, URL: http://dx.doi.org/10.1016/j.phytochem.2020.112629
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:FD12FFACFFC75F3FFF961756FFB02931
References
- Achleitner, A., Tinker, N., Zechner, E., Buerstmayr, H., 2008. Genetic diversity among oat varieties of worldwide origin and associations of AFLP markers with quantitative traits. Theor. Appl. Genet. 117, 1041-1053. https://doi.org/10.1007/s00122-008- 0843-y.
- Ahmadi-Hosseini, S.M., Souri, M.H., Farhadi, N., Moghadam, M., Omidbahgi, R., 2014. Changes in glycyrrhizin content of Iranian licorice (Glycyrrhiza glabra L.) affected by different root diameter and ecological conditions. Agricultural Communications 2, 27-33. https://profdoc.um.ac.ir/paper-abstract-1045704.html.
- Azizi, H., Aalami, A., Esfahani, M., Ebadi, A.A., 2017. Association and structure analysis of some of rice (Oryza sativa L.) genetic resources based on microsatellite markers. Cereal Res 7, 1-16. https://doi.org/10.22124/C.2017.2425.
- Bajpai, P.K., Warghat, A.R., Sharma, R.K., Yadav, A., Kant, A., Srivastava, R.B., Stobdan, T., 2014. Structure and genetic diversity of natural populations of Morus alba in the Trans-himalayan Ladakh region. Biochem. Genet. 52, 137-152. https:// doi.org/10.1007/s10528-013-9634-5.
- Balloux, F., Lugonmoulin, N., 2002. The estimation of population differentiation with microsatellite markers. Mol. Ecol. 11, 155-165. https://doi.org/10.1046/j.0962- 1083.2001.01436.x.
- Bassam, B.J., Caetanvo-Anolles, G., 1993. Silver staining of DNA in polyacrylamide gels. Appl. Biochem. Biotechnol. 42, 181-188. https://doi.org/10.1038/nprot.2007.330.
- Bradbury, P.J., Zhang, Z., Kroon, D.E., Casstevens, T.M., Ramdoss, Y., Buckler, E.S., 2007. TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23, 2633-2635. https://doi.org/10.1093/bioinformatics/ btm308.
- Brand-Williams, W., Cuvelier, M.E., Berset, C., 1995. Use of a free radical method to evaluate antioxidant activity. Lebensm. Wiss. Technol. 28, 25-30. https://doi.org/ 10.1016/S0023-6438(95)80008-5.
- Chang, C.C., Yang, M.H., Wen, H.M., Chern, J.C., 2002. Estimation of total flavonoid content in propolis by two complementary colorimetric methods. J. Food Drug Anal. 10, 178-182. https://doi.org/10.38212/2224-6614.2748.
- Dadras, A.R., Sabouri, H., Mohammadi Nejad, G.H., Sabouri, A., Shoai-Deylami, M., 2014. Association analysis, genetic diversity and structure analysis of tobacco based on AFLP markers. Mol. Biol. Rep. 41, 3317-3329. https://doi.org/10.1007/s11033- 014-3194-6.
- Dashzeveg, N., Vornam, B., Nergui, S., Buerkert, A., 2018. Differentiation of Glycyrrhiza uralensis Fisch. Ex DC. Populations in the bulgan river basin, western Mongolia. Genet. Resour. Crop Evol. 1-9 https://doi.org/10.1007/s10722-018-0656-z.
- Earl, D.A., VonHoldt, B.M., 2012. Structure HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4, 359-361. https://doi.org/10.1007/s12686-011-9548-7.
- Ebrahimi, F., Majidi, M.M., Arzani, A., Mohammadi-Nejad, G., 2017. Association analysis of molecular markers with traits under drought stress in safflower. Crop Pasture Sci. 68, 167-175. https://doi.org/10.1071/CP16252.
- Esmaeili, H., Karami, A., Hadian, J., Ebrahimi, S.N., Otto, L.G., 2020. Genetic structure and variation in Iranian licorice (Glycyrrhiza glabra L.) populations based on morphological, phytochemical and simple sequence repeats markers. Ind. Crop. Prod. 145, 112140. https://doi.org/10.1016/j.indcrop.2020.112140.
- Esmaeili, H., Karami, A., Hadian, J., Saharkhiz, M.J., Ebrahimi, S.N., 2019. Variation in the phytochemical contents and antioxidant activity of Glycyrrhiza glabra populations collected in Iran. Ind. Crop. Prod. 137, 248-259. https://doi.org/ 10.1016/j.indcrop.2019.05.034.
- Evanno, G., Regnaut, S., Goudet, J., 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14, 2611-2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x.
- Gairola, S., Shariff, N.M., Bhatt, A., Kala, C.P., 2010. Influence of climate change on production of secondary chemicals in high altitude medicinal plants: issues needs immediate attention. J. Med. Plants Res. 4, 1825-1829. https://doi.org/10.5897/ JMPR10.354.
- Hammer, O., Harper, D.A.T., Ryan, P.D., 2001. PAST: paleontological statistics software package for education and data analysis. Palaeontol. Electron. 4, 1-9. http://pal aeo-electronica.org/2001_1/past/issue1_01.htm.
- Hamrick, J.L., Godt, M.J.W., Sherman-Broyles, S.L., 1995. Gene flow among plant population: evidence from genetic markers. In: Hoch, P.C., Stephenson, A.G. (Eds.), Experimental and Molecular Approaches to Plant Biosystematics. Missouri Botanical Garden, St. Louis, ISBN 9780915279302, pp. 215-232.
- Hayashi, H., Hattori, S., Inoue, K., Khodzhimatov, O., Ashurmetov, O., Ito, M., Honda, G., 2003. Field survey of Glycyrrhiza plants in Central Asia (3). Chemical characterization of G. glabra collected in Uzbekistan. Chem. Pharm. Bull. 51, 1338-1340. https://doi.org/10.1248/cpb.51.1338.
- Hayashi, H., Inoue, K., Ozaki, K., Watanabe, H., 2005. Comparative analysis of ten strains of Glycyrrhiza uralensis cultivated in Japan. Biol. Pharm. Bull. 28, 1113-1116. https://doi.org/10.1248/bpb.28.1113.
- Hayashi, H., Shibano, M., Kusano, G., Yamamoto, H., Ikeshiro, Y., 1998. A field survey of Glycyrrhiza glabra L. in Sicily and Spain. Natural Medicines 52, 259-264.
- Hosseini, M.S., Samsampoor, D., Ebrahimi, M., Abadia, J., Khanahmadi, M., 2018. Effect of drought stress on growth parameters, osmolyte contents, antioxidant enzymes and glycyrrhizin synthesis in licorice (Glycyrrhiza glabra L.) grown in the field. Phytochemistry 156, 124-134. https://doi.org/10.1016/j.phytochem.2018.08.018.
- Hosseini, M.S., Samsampoor, D., Ebrahimi, M., Abadia, J., Sobhani Najafanadi, A., Igartua, E., Khanahmadi, M., 2020. Evaluation of glycyrrhizin contents in licorice (Glycyrrhiza glabra L.) under drought and soil salinity conditions using nutrient concentrations and biochemical traits as biomarkers. Acta Physiol. Plant. 42, 103. https://doi.org/10.1007/s11738-020-03090-4.
- Jeong, H.G., You, H.J., Park, S.J., Moon, A.R., Chung, Y.C., Kang, S.K., Chun, H.K., 2002. Hepatoprotective effects of 18ss- glycyrrhetinic acid on carbon tetrachloride-induced liver injury: inhibition of cytochrome P450 2E1 expression. Pharmacol. Res. 46, 221-227. https://doi.org/10.1016/s1043-6618(02)00121-4.
- Karkanis, A., Martins, N., Petropoulos, S.A., Ferreira, I.C.F.R., 2018. Phytochemical composition, health effects, and crop management of liquorice (Glycyrrhiza glabra L.): A medicinal plant. Food Rev. Int. 34, 182-203. https://doi.org/10.1080/ 87559129.2016.1261300.
- Khan, S., Mirja, K.J., Tayyab, M., Abdin, M.Z., 2009. RAPD profile for authentication of medicinal plant Glycyrrhiza glabra L. Med. Aromat. Plant Sci. Biotechnol. 3, 8-51. http://www.globalsciencebooks.info/Online/GSBOnline/images/0906/MAPSB_3
- Kim, H.J., Seo, J.Y., Suh, H.J., Lim, S.S., Kim, J.S., 2012. Antioxidant activities of licorice-derived prenyl flavonoids. Nutr. Res. Pract. 6, 491-498. https://doi.org/ 10.4162/nrp.2012.6.6.491.
- Kitagawa, I., 1993. Licorice root. A natural sweetener and an important ingredient in Chinese medicine. Pure Appl. Chem. 74, 1189-1198. https://doi.org/10.1351/ pac200274071189.
- Kojoma, M., Hayashi, S., Shibata, T., Yamamoto, Y., Sekizaki, H., 2011. Variation of glycyrrhizin and liquiritin contents within a population of 5-year-old licorice (Glycyrrhiza uralensis) plants cultivated under the same conditions. Biol. Pharm. Bull. 34, 1334-3137. https://doi.org/10.1248/bpb.34.1334.
- Kovalenko, P.G., Antonjuk, V.P., Maliuta, S.S., 2004. Secondary metabolites synthesis in transformed cells of Glycyrrhiza glabra L. and Potentilla alba L. as producents of radioprotective compounds. Ukr. Bioorg. Acta 1, 13-22. https://www.bioorganica. org.ua/UBAdenovo/pubs_11-204/Kovalenko_UBA_11-204.pdf.
- Kraakman, A.T.W., Niks, R.E., Van Den Berg, P.M.M., Stam, P., Van Eeuwijk, F.A., 2000. Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics 168, 435-446. https://doi.org/10.1534/genetics.104.026831.
- Kumar, S., Yadav, A., Yadav, M., Yadav, J.P., 2017. Effect of climate change on phytochemical diversity, total phenolic content and in vitro antioxidant activity of Aloe vera (L.) Burm. f. BMC Res. Notes 10 (60), 1-12. https://doi.org/10.1186/ s13104-017-2385-3.
- Kumar, S.H., Ambreen, H., Murali, T.V., Bali, S., Agarwal, M., Kumar, A., Goel, S.H., Jagannath, A., 2015. Assessment of genetic diversity and population structure in a global reference collection of 531 accessions of Carthamus tinctorius L. (safflower) using AFLP markers. Plant Mol. Biol. 33, 1299-1313. https://doi.org/10.1007/ s11105-014-0828-8.
- Li, S., Gan, X., Han, H., Zhang, X., Tian, Z., 2018. Low within-population genetic diversity and high genetic differentiation among populations of the endangered plant Tetracentron sinense Oliver revealed by inter-simple sequence repeat analysis. Ann. For. Sci. 75, 74. https://doi.org/10.1007/s13595-018-0752-4.
- Li, Y., Kong, D., Fu, Y., Susseman, M.R., Wu, H., 2020. The effect of developmental and environmental factors on secondary metabolites in medicinal plants. Plant Physiol. Biochem. 148, 80-89. https://doi.org/10.1016/j.plaphy.2020.01.006.
- Liu, T., Lin, H.M., 2012. Preliminary assessment of genetic diversity in cultivated Glycyrrhiza uralensis, G. inflate and G. glabra by chemical fingerprint and inter-simple sequence repeat markers. Adv. Mater. Res. 347, 1318-1325. https://doi.org/ 10.4028/AMR.347-353.1318.
- Liu, Y., Geng, Y., Song, M., Zhang, P., Hou, J., Wang, W., 2019. Genetic structure and diversity of Glycyrrhiza populations based on transcriptome SSR markers. Plant Mol. Biol. Rep. 1-12 https://doi.org/10.1007/s11105-019-01165-2.
- Liu, Y., Zhang, P., Song, M., Hou, J., Qing, M., Wang, W., Liu, C., 2015. Transcriptome analysis and development of SSR molecular markers in Glycyrrhiza uralensis Fisch. PloS One 10, e0143017. https://doi.org/10.1371/journal.pone.0143017.
- Luo, P., Liu, D., Li, J., 2020. Pharmacological perspective: glycyrrhizin may be an efficacious therapeutic agent for COVID-19. Int. J. Antimicrob. Agents 55, 105995. https://doi.org/10.1016/j.ijantimicag.2020.105995.
- Luthar, Z., Kreft, I., 1999. Influence of temperature on tannin content in different ripening phases of buckwheat (Fagopyrum esculentum Moench) seeds. Fagopyrum 16, 61-65. https://www.researchgate.net/publication/238080554_Influence_of_temper ature_on_tannin_content_in_different_ripening_phases_of_buckwheat_Fagopyrum_es culentum_Moench_seeds.
- Mackay, I., Powell, W., 2007. Methods for linkage disequilibrium mapping in crop. Trends Plant Sci. 12, 57-63. https://doi.org/10.1016/j.tplants.2006.12.001.
- McDermott, J.M., McDonald, B.A., 1993. Gene flow in plant pathosystems. Annu. Rev. Phytopathol. 31, 353-373. https://doi.org/10.1146/annurev.py.31.090193.002033.
- Mochida, K., Sakurai, T., Seki, H., Yoshida, T., Takahagi, K., Sawai, S., Uchiyama, H., Muranaka, T., Saito, K., 2017. Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume. Plant J. 89, 181-194. https://doi.org/10.1111/ tpj.13385.
- Mohlke, K.L., Lange, E.M., Valle, T.T., Ghosh, S., Magnuson, V.L., Silander, K., Watanabe, R.M., Chines, P.S., Bergman, R.N., Tuomilehto, J., Collins, F.S., Boehnke, M., 2001. Linkage disequilibrium between microsatellite markers extends beyond 1 cM on chromosome 20 in Finns. Genome Res. 11, 1221-1226. https://doi. org/10.1101/gr.173201.
- Murray, M.G., Thompson, W.F., 1980. Murray and Thompson. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8, 4321-4326. https://doi.org/ 10.1093/nar/8.19.4321.
- Nassiri-Asl, M., Hosseinzadeh, H., 2008. Review of pharmacological effects of Glycyrrhiza sp. and its bioactive compounds. Phytother Res. 22, 709-724. https://doi.org/ 10.1002/ptr.2362.
- Nei, M., 1974. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U.S.A. 70, 3321-3323. https://doi.org/10.1073/pnas.70.12.3321.
- Oloumi, H., Hassibi, N., 2011. Study the correlation between some climate parameters and the content of phenolic compounds in roots of Glycyrrhiza glabra. J. Med. Plants Res. 5, 6011-6016. https://doi.org/10.5897/JMPR11.666.
- Peakall, R., Smouse, P., 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics 1, 6-8. https://doi. org/10.1093/bioinformatics/bts460.
- Powell, W., Morgante, M., Andre, C., Hanafey, M., Vogel, J., Tingey, S.V., Rafalski, A., 1996. The comparison of RFLP, RAPD, AFLP and SSRP (microsatellite) markers for germplasm analysis. Mol. Breed. 2, 225-238. https://doi.org/10.1007/BF00564200. Prevost, A., Wilkinson, M.J., 1999. A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 98, 107-112. https://doi. org/10.1007/s001220051046.
- Pritchard, J.K., Stephens, M., Donnelly, P., 2000. Inference of population structure using multilocus genotype data. Genetics 155, 945-959. https://www.genetics.org/conten t/genetics/155/2/945.full.pdf.
- Rezaei, S., Nejadsattari, T., Assadi, M., Khavarinejad, R.A., Mehregan, I., 2017. Study of glycyrrhizic acid contents from Glycyrrhiza glabra populations in Iran and their relation with environmental factors. Biodiversitas 18, 212-220. https://doi.org/ 10.13057/biodiv/d180128.
- Saad, A., Darvishzadeh, R., 2017. Association analysis of biotic and abiotic stresses resistance in chickpea (Cicer spp.) using AFLP markers. Biotechnol. Biotechnol. Equip. 31, 698-708. https://doi.org/10.1080/13102818.2017.1333455.
- Saad-Allah, K.M., Youssef, M.S., 2018. Phytochemical and genetic characterization of five quinoa (Chenopodium quinoa Willd.) genotypes introduced to Egypt. Physiol. Mol. Biol. Plants 24, 617-629. https://doi.org/10.1007/s12298-018-0541-4.
- Shannon, C.E., 1948. A mathematical theory of communication. Bell Labs Tech. J. 27, 379-423. https://doi.org/10.1002/j.1538-7305.1948.tb00917.x.
- Sharifi-Tehrani, M., Kazemi, A., Shabani, L., 2012. Phenetic relationships among natural population accessions of Glycyrrhiza glabra L. (Fabaceae) in central Zagros region of Iran, based on quantitative morphology, flavonoids and glycyrrhizin contents data. J. Taxon. Biosyst. 13, 59-72. https://www.sid.ir/en/journal/ViewPaper.aspx? id=348169.
- Slatkin, M., 1985. Rare alleles as indicators of gene flow. Evolution 39, 53-65. https:// doi.org/10.1111/j.1558-5646.1985.tb04079.x.
- Sonald, S.F., Laima, S.K., 1999. Phenolics and Cold Tolerance of Brassica Napus, vol. 1. The Regional Institute Online Publishing, pp. 1-5. http://www.regional.org.au/au/ gcirc/4/421.htm.
- Tohma, H.S., Gulcin, I., 2010. Antioxidant and radical scavenging activity of aerial parts and roots of Turkish liquorice (Glycyrrhiza glabra L.). Int. J. Food Prop. 13, 657-671. https://doi.org/10.1080/10942911003773916.
- Velvizhi, S., Annapurani, S., 2018. Estimation of total flavonoid, phenolic content, and free radical scavenging potential of Glycyrrhiza glabra root extract. Asian J. Pharmaceut. Clin. Res. 11, 231-235. https://doi.org/10.22159/ajpcr.2018. v11i4.23711.
- Visavadiya, N.P., Soni, B., Dalwadi, N., 2009. Evaluation of antioxidant and antiatherogenic properties of Glycyrrhiza glabra root using in vitro models. Int. J. Food Sci. Nutr. 60, 135-149. https://doi.org/10.1080/09637480902877998.
- Vlaisavljevi´c, S., ˇSibul, F., Sinka, I., Zupko, I., Ocsovszki, I., Jovanovi´c-ˇSanta, S., 2018. Chemical composition, antioxidant and anticancer activity of licorice from Fruska Gora locality. Ind. Crop. Prod. 112, 217-224. https://doi.org/10.1016/j. indcrop.2017.11.050.
- Vos, P., Hogers, R., Bleeker, M., Reijans, M., van deLee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M., Zabeau, M., 1995. AFLP a new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407-4414. https://doi.org/10.1093/nar/ 23.21.4407.
- Wanger, G.J., 1979. Content and vacuole/extra vacuole distribution of neutral sugars, free amino acids, and anthocyanins in protoplasts. Plant Physiol. 64, 88-93. https:// doi.org/10.1104/pp.64.1.88.
- Weising, K., Nybom, H., Wolff, K., Kahl, G., 2005. DNA Fingerprinting in Plants. Principles, Methods and Applications. CRC Press, Boca Raton, FL, USA, pp. 235-276. https://doi.org/10.1201/9781420040043.
- Wright, S., 1978. Evolution and the Genetics of Populations. University of Chicago Press, Chicago, USA. ISBN-13: 978-0226910383.
- Yamazaki, M., Sato, A., Shimomura, K., Saito, K., Murakoshi, I., 1994. Genetic relationships among Glycyrrhiza plants determined by RAPD and RFLP analyses. Biol. Pharm. Bull. 17, 1529-1531. https://doi.org/10.1248/bpb.17.1529.
- Yao, H., Zhao, Y., Chen, D.F., Chen, J.K., Zhao, T.S., 2008. ISSR primer screening and preliminary evaluation of genetic diversity in wild populations of Glycyrrhiza uralensis. Biol. Plant. (Prague) 52, 117-120. https://doi.org/10.1007/s10535-008- 0022-7.
- Yeh, F.C., Yang, R.C., Boyle, T., 1997. POPGENE. version 1.32 ed. Software Microsoft Window-based freeware for population genetic analysis. University of Alberta, Edmonton. https://www.scienceopen.com/document?vid=76d06904-138c-442 e-8da7-3e9fbd47b3cd.
- Yu, J., Pressoir, G., Briggs, W.H., Vroh Bi, I., Yamasaki, M., Doebley, J.F., McMullen, M. D., Gaut, B.S., Nielsen, D.M., Holland, J.B., Kreovich, S., Buckler, E.S., 2006.
- A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 38, 203-208. https://doi.org/10.1038/ng1702.
- Yu, F., Wang, Q., Wei, S., Wang, D., Fang, Y., Liu, F., Zhao, Z., Hou, J., Wang, W., 2015. Effect of genotype and environment on five bioactive components of cultivated licorice (Glycyrrhiza uralensis) populations in Northern China. Biol. Pharm. Bull. 38, 75-81. https://doi.org/10.1248/bpb.b14-00574.
- Zhang, J., Xu, B., Li, M., 2010. Genetic diversity of populations of an endangered medicinal plant species (Glycyrrhiza uralensis) in different environments of North China. J. Med. Plants Res. 4, 830-836. https://doi.org/10.5897/JMPR10.127.
- Zhang, J.T., Xu, B., Li, M., 2011. Relationships between the bioactive compound content and environmental variables in Glycyrrhiza uralensis populations in different habitats of North China. Phyton 80, 160-166. https://doi.org/10.32604/ phyton.2011.80.161.
- Zhang, X.Y., Wu, R.J., Chen, J., An, D.K., 1989. Determination of glycyrrhizin and its metabolite glycyrrhetinic acid in rabbit plasma by high-performance liquid chromatography after oral administration of licorzin. J. Chromatogr. B 495, 343-348. https://doi.org/10.1016/s0378-4347(00)82643-2.