Published August 21, 2023
| Version v1
Dataset
Open
EUKulele databases for Phaeocystis mapping (Krinos et al. 2023)
Creators
- 1. MIT-WHOI Joint Program in Oceanography/Applied Ocean Science and Engineering
- 2. Woods Hole Oceanographic Institution
- 3. Texas A&M University
- 4. University of Georgia
- 5. University of Rhode Island
- 6. Massachusetts Institute of Technology
- 7. Joint Genome Institute
Description
Supplementary dataset for Krinos et al. 2023, Missing microbial eukaryotes and misleading meta-omic conclusions, bioRxiv. Each zipped folder is a different database containing some subset of the Phaeocystis references used to map against the Tara Oceans metagenomes. These folders contain a combined database and taxonomy table derived from other sequencing dataset resources which can be used directly with the EUKulele software.
- `marmmetsp_all_phaeo.tar.gz` - full database including MarRef, MMETSP (Keeling et al. 2014), and all Phaeocystis references as listed in Krinos et al. (2023)
- `marmmetsp_all_colonies.tar.gz` - database including MarRef, MMETSP (Keeling et al. 2014), and Phaeocystis references known to form colonies (Phaeocystis antarctica, Phaeocystis pouchetii, Phaeocystis globosa)
- `marmmetsp_all_free.tar.gz` - database including MarRef, MMETSP (Keeling et al. 2014), and Phaeocystis references known not to form colonies (Phaeocystis rex, Phaeocystis jahnii, Phaeocystis cordata)
Notes
Files
Files
(13.8 GB)
Name | Size | Download all |
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md5:78bad1ccb55ed08fba4353d969dc1bac
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4.7 GB | Download |
md5:d474bc72b549be64c89191137a486220
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4.6 GB | Download |
md5:d6ff8de7fb5902fb5bd9bb3c9095ba5d
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4.6 GB | Download |