Published August 20, 2023 | Version v1
Dataset Open

SYSTEMS LEVEL IDENTIFICATION OF A MATRISOME-ASSOCIATED MACROPHAGE POLARIZATION STATE IN MULTI-ORGAN FIBROSIS

Creators

  • 1. Duke-NUS Medical School

Description

This Zenodo repository contains the processed Seurat objects for "SYSTEMS LEVEL IDENTIFICATION OF A MATRISOME-ASSOCIATED MACROPHAGE POLARIZATION STATE IN MULTI-ORGAN FIBROSIS".

The Seurat objects include:

  • Tissue-specific monocytes / macrophages (used in Figure 1,3,4)
    • endo.rds: Endometrium monocytes / macrophages
    • heart.rds: Heart monocytes / macrophages
    • kidney.rds: Kidney monocytes / macrophages
    • liver.rds: Liver monocytes / macrophages
    • lung.rds: Lung monocytes / macrophages
    • skin.rds: Skin monocytes / macrophages
  • SPP1 macrophages across all six tissues (used in Figure 2,3,4,5)
    • SPP1seu.rds

Code for generating these objects can be found at: https://github.com/the-ouyang-lab/mam-reproducibility

Files

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md5:05449188e2ce01f7654b6141cc7e824c
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