Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine

Supplementary Table Captions:

Supplementary Table S9. Evaluation and parameter determination of host and microbiome RNA read classification using simulation datasets

Supplementary Table S10. 40 pathways significantly upregulated in the cecum as compared to the transverse colon

Supplementary Table S11. Host-microbiome gene co-expression network edges

Supplementary Table S12. Host-host gene co-expression network edges

Supplementary Table S13. Microbiome-microbiome gene co-expression network edges

Supplementary Table S14. List of genes included in each gene module identified from the gene co-expression network

Supplementary Table S15. Results of enrichment analysis for each gene module identified from the gene co-expression network

Supplementary Table S16. The top 32 bacterial species in terms of expression abundance based on metatranscriptome profiles

Supplementary Table S17. Number of microbiome RNA reads annotated by the KEGG database

Supplementary Table S18. Results of enrichment analysis of gene modules for each parameter

Supplementary Table S19. Evaluation of modules in each parameter of Newman algorithm

Supplementary Table S20. Evaluation of modules in each parameter of Louvain algorithm

Supplementary Table S21. Evaluation of modules in each parameter of Leiden algorithm

Supplementary Table S22. Evaluation of modules in each parameter of WGCNA