Published February 5, 2025
| Version 1.0.1
Dataset
Open
Nicotiana sylvestris genome assembly and annotation
Authors/Creators
Description
De novo genome assembly and annotation of Nicotiana sylvestris.
The following files are available:
- nsyl.fa.gz: reference genome sequence in fasta format
- nsyl.gff3.gz: gene annotation in GFF3 format
- nsyl.gtf.gz: gene annotation in GTF format
- nsyl.tx.fa.gz: transcript sequences in fasta format
- nsyl.cds.fa.gz: coding sequences in fasta format
- nsyl.prot.fa.gz: protein sequences in fasta format
- nsyl.tsv.gz: gene functional annotation in TSV format
- nsyl.rt.fa.gz: retrotransposon sequences in fasta format
- nsyl.rt.gff3.gz: retrotransposon annotation on GFF3 format
- nsyl.rt.tsv.gz: retrotransposon annotation in TSV format
- nsyl.chr_to_id.tsv.gz: mapping of sequence names to ids in TSV format
Files
Files
(1.0 GB)
| Name | Size | |
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md5:08d46b20c8991419f5f6253cd776334a
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18.7 MB | Download |
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md5:49fc6d54d8c69b2f4f373ac8c9b92604
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701 Bytes | Download |
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md5:0cca66347c7ca29d5cb35bc1dd0b1607
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769.3 MB | Download |
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md5:7fdf2ed33086f5474e3b7bbfb4e51848
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5.0 MB | Download |
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md5:af792cf1cec66cc50fc2f6d5d3af6f7b
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5.2 MB | Download |
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md5:5399b1d1f27e95e212773ad0238197a6
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11.6 MB | Download |
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md5:70fd7b3036fc4d49833bf6534c6ac6d8
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187.0 MB | Download |
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md5:cc54f95cb31516070886a7b2a394e9ff
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7.2 MB | Download |
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md5:fd78e08856924f484dfc9c08a6e65523
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1.2 MB | Download |
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md5:19a33abf616e8c6767708891d4181c66
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1.5 MB | Download |
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md5:5d3ad8c91487495dc46285964222877e
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21.3 MB | Download |
Additional details
Related works
- Is cited by
- Journal article: 10.1038/s41597-024-02965-2 (DOI)