Published August 6, 2023
| Version 1
Software
Open
ChromGene: gene-based modeling of epigenomic data
Description
Software for ChromGene in two files:
- generate_chromgene_input_files.py: Generates binary input files for training in ChromHMM
- chromgene_posteriors_to_components.py: Takes posterior probability files generated by ChromHMM and produces gene-level component assignments
Trained model
- model_37.txt
Additional files:
- Additional File 1.docx: Supplementary figures
- Additional File 2.xlsx: ChromGene descriptions and statistics
- Additional File 3.xlsx: ChromGene assignments (xlsx)
ChromGene assignments (txt)
- chromgene_assts_by_celltype_name.hg19.tsv.gz
- chromgene_assts_by_celltype_name.hg38.tsv.gz
- chromgene_assts_by_eid.hg19.tsv.gz
- chromgene_assts_by_eid.hg38.tsv.gz
Files
model_37.txt
Files
(48.5 MB)
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