Published March 29, 2023
| Version 0.3
Dataset
Open
spotless-benchmark-datasets
Description
In standards.tar.gz, the silver standards are formatted as silver_standard_i-j, where i refers to the originating single-cell dataset and j refers to the synthspot abundance pattern. Each directory of the silver standard contains 10 replicates.
| i | single-cell dataset | j | synthvisium dataset type |
| 1 | brain cortex | 1 | artificial_uniform_distinct |
| 2 | single-cell cerebellum | 2 | artificial_diverse_distinct |
| 3 | single-nucleus cerebellum | 3 | artificial_uniform_overlap |
| 4 | hippocampus | 4 | artificial_diverse_overlap |
| 5 | kidney | 5 | artificial_dominant_celltype_diverse |
| 6 | scc_p5 | 6 | artificial_partially_dominant_celltype_diverse |
| 7 | artificial_dominant_rare_celltype_diverse | ||
| 8 | artificial_regional_rare_celltype_diverse | ||
| 9 | artificial_missing_celltypes_visium |
All reference datasets are in the 'reference/' folder.
To use liver_dataset.tar.gz, please read liver_README.txt before proceeding.