Published August 2, 2023
| Version v1
Dataset
Open
HmmUFOtu DB (ggRDP18 full length)
Description
A reference database for HmmUFOtu by Sangsoo Kim.
The original database pre-built with GreenGene Database was augmented with RDP 18 trainingset sequences. The sequences in this database are of full length 16S rRNA. For V3-V4 regions only, there is another Zenodo entry. For details, see our github.
The main file, "ggRDP18_GTR.ptu" is 26GB big, and its upload failed with "Bad gateway".
As an alternative, "hmmufotu-build.bash" script is uploaded. It can be used to build the database using the files in this fold.
Files
Files
(1.4 GB)
| Name | Size | |
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md5:e6535ef27510562a09962889ebab707c
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3.6 MB | Download |
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md5:56f6acfed524020c07b470dd861cc74f
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217.8 MB | Download |
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md5:925958f0cff145f2a3e01a709913bcb8
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19.2 MB | Download |
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md5:ab8c0052fc15826c5af51802402d352e
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13.1 MB | Download |
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md5:75dc174a572ec3fc8cff73c8455f58a9
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511.5 MB | Download |
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md5:65867bfbd224fb7e2cddda8b42902356
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191.6 kB | Download |
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md5:6bbd9a26b190fdb5cf601035439a9c62
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211.1 MB | Download |
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md5:45e944d3a17c862da01e1b023e1bd7d6
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433.8 MB | Download |
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md5:2ba78da443d55bd43015ae69773c0210
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3.6 MB | Download |
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md5:78b712d9ad081359665a870b0ee13aea
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321 Bytes | Download |