Published July 26, 2023 | Version v1

Simulated ChannelSpin Dataset

  • 1. Princeton University

Description

This example dataset corresponds to the paper https://arxiv.org/abs/1907.01898.

Moscovich, A., Halevi, A., Andén, J., & Singer, A. (2020). Cryo-EM reconstruction of continuous heterogeneity by Laplacian spectral volumes. Inverse Problems36(2), 024003.

Expresses the ChannelSpin feature without ChannelStretch. Includes 54 generated volumes sized (54,54,54) and stack of 10000 projection images (54,54).

The dataset was originally created by the paper authors in using several legacy MATLAB functions denoted by "gen_fakekv*".  That dataset was converted into a compressed Numpy (.npz) dataset compatible with ASPIRE-Python.  The dataset includes parameters (rotations, amplitudes, states, etc) required to simulate an equivalent image stack in Python starting from the volumes, or used directly to provide a ground truth reference.  Alternatively, these parameters can be modified to generate different image stacks.

Files

Files (291.4 MB)

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Additional details

Related works

Is supplement to
Software: 10.5281/zenodo.5657281 (DOI)