chidwi/khan_dwibedi_et_al: Synergy and oxygen adaptation for development of next-generation probiotics

This repository contains notebooks to plot some of the figures associated with the manuscript

"Synergy and oxygen adaptation for development of next-generation probiotics"

Authors: Muhammed Tanweer Khan^1,2,*, Chinmay Dwibedi^1,3,*, Daniel Sundh⁴, Meenakshi Pradhan¹, Jamie D Kraft¹, Robert Caesar¹, Valentina Tremaroli^1,#, Mattias Lorentzon^4,5,6#, Fredrik Bäckhed^1,7,8#

*; # contributed equally to this work

1 Wallenberg Laboratory, Department of Molecular and Clinical Medicine, Institute of Medicine, University of Gothenburg, Gothenburg, Sweden 2 Metabogen AB, AZ BioVentureHub, HE424, c/o AstraZeneca R&D Mölndal, 431 83 Mölndal,Sweden 3 Institute of Neuroscience and Physiology, University of Gothenburg, Gothenburg, Sweden 4 Sahlgrenska Osteoporosis Centre, Department of Internal Medicine and Clinical Nutrition,Institute of Medicine, University of Gothenburg, Sweden. 5 Region Västra Götaland, Geriatric Medicine Clinic, Sahlgrenska University Hospital Mölndal 6 Mary MacKillop Institute for Health Research, Australian Catholic University, Melbourne, VIC,Australia. 7 Region Västra Götaland, Sahlgrenska University Hospital, Department of Clinical Physiology, Gothenburg, Sweden 8 Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark

Correspondence: Fredrik@wlab.gu.se

Code contributions by: Chinmay Dwibedi

Contents: The rdata files contains source data objects, rmd files with source codes and unedited plots in pdf - reproducible with the source code and source data. All files are named according to the plot names from the manuscript.

Metagenome and genome assemblies are available at ENA, study id: PRJEB62463 For further details on methods, and results please follow the article.