Published June 7, 2023 | Version v1

Datasets for the Tiwary Lab contribution to the NIST JARVIS database

Authors/Creators

  • 1. University of Maryland, College Park

Description

ala2.zip:

  • test -- Alanine dipeptide in vacuum, simulated using GROMACS 2020.2 at 450 K using the amber99sb-ildn force field for 1 microsecond, unbiased
  • ref -- Alanine dipeptide in vacuum, simulated using GROMACS 5.0 at 450 K using the amber03 force field for 800 ns, unbiased

ala3.zip:

  • test -- Alanine tetrapeptide in vacuum, simulated using GROMACS 2021.4 at 400 K using the amber99sb-ildn force field, three 1 microscond replicates, unbiased
  • ref -- Alanine tetrapeptide in vacuum, simulated using GROMACS 5.0.4 at 400 K using the amber99sb-ildn force field for 1 microsecond, unbiased (trajectory data not included)

aib9.zip:

  • test -- Alpha-aminoisobutyric acid-9 solvated in TIP3P, simulated using GROMACS 2018.8 at 500 K using the CHARMM36m force field for 200 ns, unbiased
  • ref -- Alpha-aminoisobutyric acid-9 solvated in TIP3P, simulated using GROMACS 2018.8 at 400 K using the CHARMM36m force field for 714 ns, biased using well-tempered metadynamics as described in https://pubs.acs.org/doi/10.1021/acs.jctc.2c00058 (trajectory data not included)

Files

aib9.zip

Files (1.1 GB)

Name Size
md5:dd96e7f2e42921d0b3c2ce71570aac52
461.7 MB Preview Download
md5:666398fa2b67e4bebd229fb986bb9bdb
552.5 MB Preview Download
md5:91235183d00c62ce9634cb80cc3f8c8a
84.7 MB Preview Download

Additional details

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