Mega-scale experimental analysis of protein folding stability in biology and design
Creators
- 1. Northwestern University
- 2. University of Washington
- 3. Sorbonne Université
- 4. Weizmann Institute of Science
- 5. Harvard University
Description
Datasets and scripts for Nature manuscript titled "Mega-scale experimental analysis of protein folding stability in biology and design
"
Old bioRxiv link: https://doi.org/10.1101/2022.12.06.519132
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Processed_K50_dG_datasets.zip
Tsuboyama2023_Dataset1_20230416.csv
Tsuboyama2023_Dataset2_Dataset3_20230416.csv
Single_DMS_list.csv
Double_DMS_list.csv
Triple_DMS_list.csv
Heat_maps_single_DMS.pdf
Heat_maps_double_DMS.pdf
Raw_NGS_count_tables.zip
NGS_count_lib1.csv
NGS_count_lib2.csv
NGS_count_lib3.csv
NGS_count_lib4.csv
K50_dG_tables.zip
K50_dG_lib1.csv
K50_dG_lib2.csv
K50_dG_lib3.csv
K50_dG_lib4.csv
Data_tables_for_figs.zip
dG_extdG_data_Fig1.csv
dG_site_feature_Fig3.csv
dG_for_double_mutants_Fig4.csv
dG_non_redundant_natural_Fig5.csv
dG_GEMME_non_redundant_natural_Fig6.csv
Pipeline_qPCR_data.zip
Raw_qPCR_data_FigS1.csv
Process_qPCR_data.ipynb
Pipeline_K50_dG.zip
STEP1_module.ipynb
STEP1_run.ipynb
STEP2_run.ipynb
STEP3_run.ipynb
STEP4_module.ipynb
STEP4_run.ipynb
STEP5_module.ipynb
STEP5_run.ipynb
Raw_NGS_counts_overlapped_seqs_STEP1_lib1_lib2.csv
Raw_NGS_counts_overlapped_seqs_STEP1_lib2_lib3.csv
Raw_NGS_counts_overlapped_seqs_STEP1_lib1_lib4.csv
Raw_NGS_counts_overlapped_seqs_STEP1_lib2_lib4.csv
Raw_NGS_counts_overlapped_seqs_STEP1_lib3_lib4.csv
K50_scrambles_for_STEP3.csv
STEP1_out_protease_concentration_trypsin
STEP1_out_protease_concentration_chymotrypsin
STEP3_unfolded_model_params
Pipeline_figure_model.zip
Burial_side_chain_contact_Fig3_Fig6.ipynb
Additive_model_Fig4.ipynb
Classification_model_Fig5.ipynb
Data_quality_filtering_script.ipynb
AlphaFold_model_PDBs.zip
Blueprints_for_EEHH.zip
eehh_EA_GBB_AGBB.bp
eehh_GG_GBB_AGBB.bp
eehh_XX_XXX_XXXX.bp
Files
AlphaFold_model_PDBs.zip
Files
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