Published May 30, 2023
| Version 0.0.1
Dataset
Open
Repeat catalogs for TRGT
Description
This dataset contains various repeat catalogs for the Tandem Repeat Genotyping Tool (TRGT):
- pathogenic_repeats.hg38.bed contains annotations of 56 known pathogenic repeats.
- polymorphic_repeats.hg38.bed contains 171,146 polymorphic repeats. The original version of this catalog was made for short reads and is distributed under CC BY-SA 4.0 license.
- adotto_repeats.hg38.bed contains 937,122 repeats originally released by the Genome in a Bottle tandem repeat benchmarking project 10.5281/zenodo.7226352.
Please consider citing TRGT preprint if you are using these data.
Files
Files
(31.0 MB)
Name | Size | Download all |
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md5:9cfe0da4028cf7f7502162ee090199e4
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18.2 MB | Download |
md5:06ff62717cad4320878c9f209c01b253
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3.5 kB | Download |
md5:e9402d6b02b489cb139693891e959507
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12.8 MB | Download |
Additional details
Related works
- Is cited by
- Preprint: 10.1101/2023.05.12.540470 (DOI)
- Is derived from
- Dataset: 10.5281/zenodo.7226352 (DOI)