Dataset Open Access
McDaniel, Elizabeth; Weiss, Emily; Dutton, Rachel; Borges, Adair; Reiter, Taylor
Sourmash output files from signature sketches, compare, gather, and taxonomy of time-series cheese metagenomes generated using both short- and long-read sequencing technologies. Originally generated as part of the pub "Paired long- and short-read metagenomics of cheese rind microbial communities at multiple time points". Analysis code of this data provided on Github at https://github.com/Arcadia-Science/metagenomics-of-cheese-rind-microbiomes.
To directly analyze this data, download and unzip the tarball. Clone the Github repository and point to the 2023-05-23-TMI-processed-data directory within a project using the `scripts/TMI-sourmash-explore.R` script. Install the packages used in the script if necessary.