PDB70 Structural Library and Metadata
Description
Protein structural library developed from the PDB70 sequence database as well as associated metadata for each structure. The structures associated with each entry in the PDB70 structural library are provided in a tarball. When available, the metadata for a protein has been gathered from UniProtKB flat files. A focus is given to enzyme commission (EC) number metadata as this type of ontology is of main focus for identifying and classifying enzymes within a proteome.
Changelog:
v1.0.2 - Added list file for structures that have active EC numbers, accounting for defunct EC numbers in UniProtKB metadata being replaced with an active EC number when relevant.
v1.0.1 - Small clean up of the provided .ipynb document.
v1.0.0 - Original push of the PDB70 structural database and metadata.
Files
PDB70_structural_database_metadata.ipynb
Files
(4.7 GB)
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Additional details
Related works
- Is compiled by
- Software: https://github.com/BSDExabio/SAFA/releases/tag/v1.0.0 (URL)
- Is supplement to
- Dataset: 10.13139/ORNLNCCS/1973885 (DOI)