Published February 20, 2023
| Version v4
Dataset
Open
Pangenomes of multiple species for the "Building pangenome graphs" publication
Authors/Creators
- 1. The University of Tennessee Health Science Center; Department of Genetics, Genomics and Informatics
Description
Pangenomes of multiple species for the PGGB paper.
Each pangenome is represented in a FASTA format file. Each FASTA file is compressed with bgzip so that it can be indexed and directly input to PGGB.
The name of each file specifies:
- the species;
- the number of haplotypes;
- the chromosome.
All sequence names follow the PanSN specification.
In addition, pangenome graphs (compressed with zstd) are provided for:
- the primate chromosome 6;
- the E. coli pangenome with 50 haplotypes.
Files
Files
(11.4 GB)
| Name | Size | |
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md5:03b944dfc79950fa12c9002d43459611
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63.9 MB | Download |
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md5:db69d3641e51b69df9f49d8e536755ed
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73.4 MB | Download |
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md5:ffe5fbf68894a7b8d688362a6df0e273
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61.2 MB | Download |
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md5:0bdbdbd8ce1b4323b8779c2da64559a9
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799.4 MB | Download |
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md5:a6513914ade700e4aef4a29290f4bec8
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4.7 GB | Download |
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md5:7b379222747dac73c17db5f45c771d64
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302.4 MB | Download |
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md5:5872fe857811f3c1249bccfd2b21165c
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783.8 MB | Download |
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md5:9da3e3c30b1f52859b3708033e9a4d64
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693.3 MB | Download |
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md5:60c1936d3ff940b7029b2a6ae35d0e5a
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205.2 MB | Download |
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md5:9874da52aaeaa066abb26fc899c3e35b
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185.2 MB | Download |
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md5:822e0fc59346ecb88bfa36c1cad11a82
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2.5 GB | Download |
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md5:48e911dab1064fd8ca22d4e2da3d4135
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28.4 MB | Download |
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md5:592bf6196a41e48d4ce071225dad405a
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659.8 MB | Download |
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md5:192662488118642925e75770646b14ef
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379.7 MB | Download |