Published May 13, 2023
| Version v1
Dataset
Open
Regulation of mature mRNA levels by RNA processing efficiency
Authors/Creators
- 1. University of Oxford
- 2. University of Leicester, University of Oxford
Description
Data from the research paper "Regulation of mature mRNA levels by RNA processing efficiency" by Henfrey, C., Murphy, S., and Tellier, M.:
-Highest expressed transcript annotation for protein-coding genes, gencode v38.
-15 txt (BED) files for chromatin vs nucleoplasm enrichment gene sets: HeLa full gene sets, canonical protein only sets, chromatin RNA seq subsamples, mNET seq subsamples, Raji gene sets.
-Proteomics data table
-mRNA half-life table
-Splicing efficiency for POINT-seq, ChrRNA-seq, NucRNA-seq table
-Ser2-P mNET-seq readthrough index data table
-Splicing efficiency for siLuc/siEX3 table (ChrRNA-seq, NucRNA-seq)
-RMATs output tables for alternative splicing results (siEX3 vs siLuc)
-Tables for TSS:TES quantifications (mNET-seq(CTD) vs log2FoldChange, chr/nuc/mnet siEX3 vs siLuc)
Notes
Funding:
Wellcome Trust Investigator Awards [WT106134AIA and WT210641/Z/18/Z to S.M.]. Funding for open access charge: Wellcome Trust
Files
chr_nuc_point_splicing_protCoding.txt
Files
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Additional details
Related works
- Is supplement to
- Journal article: 10.1101/2022.10.24.513557 (DOI)