Published May 11, 2023 | Version v1
Dataset Open

Single particle tracking data for Sittewelle & Royle (2023)

  • 1. University of Warwick

Description

A project to analyse intracellular vesicle mobility.

A preprint of the manuscript is available at https://doi.org/10.1101/2023.05.10.540182

Code associated with the manuscript can be found at https://github.com/quantixed/p063p036 

TrackMate XML files for:

  • ATG9A, Clathrin, EB3, LAMP1, ML1N, Rab5, Rab11, Rab30, Rab35, SCAMP1, SCAMP3, TPD54
  • TPD54 (pre and post bleach)

are available here together with some of the larger outputs from the code.

These TrackMate XML files can be processed using TrackMateR as described here or using the code associated with the manuscript. The folders contain calibration csv files which will correct the scaling where required during processing with TrackMateR. 

Files

Archive.zip

Files (1.2 GB)

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Additional details

Related works

Is cited by
Preprint: 10.1101/2023.05.10.540182 (DOI)
Is supplement to
Software: https://github.com/quantixed/p063p036 (URL)

Funding

UK Research and Innovation
Intracellular Nanovesicles: their formation, transport and cargo BB/V003062/1