Palleja et al. 2018 Metagenome Assemblies for Veseli et al. 2023

A collection of anvi'o contigs databases for 57 human fecal metagenome assemblies generated for the study by Veseli et al. titled "High metabolic independence is a determinant of microbial resilience in the face of gut stress". These are publicly-available gut metagenomes originally obtained from the study by Palleja et al titled "Recovery of gut microbiota of healthy adults following antibiotic exposure" (https://doi.org/10.1038/s41564-018-0257-9). See `PALLEJA_ET_AL_SAMPLES_INFO.txt` file for sample SRA accessions.

The metagenomes were assembled individually using IDBA-UD as part of the anvi'o metagenomics workflow in anvi'o v7.1-dev. As part of this workflow, they were annotated with KEGG KOfams using `anvi-run-kegg-kofams` and a KEGG snapshot from December 12, 2020 (modules database hash value `45b7cc2e4fdc`). See manuscript and its reproducible workflow for details.