There is a newer version of the record available.

Published May 3, 2023 | Version 138.1
Dataset Open

SILVA 138.1 SSURef NR99 database formatted for phyloFlash

Authors/Creators

  • 1. Thünen Institute for Biodiversity

Contributors

Description

Small-subunit ribosomal RNA reference database from SILVA release 138.1, formatted for use with phyloFlash (https://github.com/HRGV/phyloFlash) (version >=3.4). phyloFlash is a pipeline for rapid screening and targeted assembly of SSU rRNA sequences from short-read metagenomic or transcriptomic datasets.

Please see README.md for more details and license information.

Files

README.md

Files (5.5 GB)

Name Size
md5:544499d1afc6cb0e0a824104ed573ef5
5.5 GB Download
md5:1362c1b677ba267b35f1a1ac37c53c4f
3.1 kB Preview Download
md5:79a80df3eb578830f29d004f0d7ea107
451 Bytes Preview Download

Additional details

Related works

Is compiled by
Software: https://github.com/HRGV/phyloFlash (URL)
Is derived from
Dataset: https://www.arb-silva.de/fileadmin/silva_databases/release_138.1/Exports/SILVA_138.1_SSURef_NR99_tax_silva_trunc.fasta.gz (URL)
Dataset: https://ftp.ncbi.nlm.nih.gov/pub/UniVec/UniVec (URL)

References

  • 10.1128/mSystems.00920-20
  • 10.1093/nar/gks1219
  • 10.1093/nar/gkt1209