Published April 25, 2023
| Version 2.0
Dataset
Open
Simulated water models with Apoferritin for use in cryo-EM image simulations with amorphous ice
Authors/Creators
- 1. University of Southampton
- 2. Rosalind Franklin Institute
Description
This dataset contains the atomic coordinates of several water models produced using the NAMD molecular dynamics software. The contents of each file is listed below.
- water_81_coords.pdb - water only in a cubic box with side length 81A
- water_243_coords.pdb - water only in a cubic box with side length 243A
- water_486_coords.pdb - water only in a cubic box with side length 486A
- water_567_coords.pdb - water only in a cubic box with side length 567A
- water_645_coords.pdb - water only in a cubic box with side length 645A
- water_735_coords.pdb - water only in a cubic box with side length 735A
- apo_water_723_coords.pdb - water and apoferritin in a cubic box with side length 723A where apoferritin atoms are constrained
Files
Files
(10.6 GB)
| Name | Size | |
|---|---|---|
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md5:d679528a3e5b63029f6f34115bf6ed38
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3.0 GB | Download |
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md5:f64698b98a084fb6d30ccc6bdcbda069
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111.3 MB | Download |
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md5:d668e18f6c47eb6f58ff2a8643fc19d7
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894.5 MB | Download |
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md5:f51490159214de459b0b39fe8a53a003
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1.4 GB | Download |
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md5:b04b3c73993f4089ae05e855cda546d2
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2.1 GB | Download |
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md5:e8820fcbdb9a16e512a5acbd81c591d6
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3.1 GB | Download |
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md5:7731dcae8f6a995e5562b4ca5184fbaf
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4.0 MB | Download |