Published April 24, 2023
| Version v1
Journal article
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Phosphorylation at Ser65 modulates ubiquitin conformational dynamics
Authors/Creators
- 1. Johns Hopkins University School of Medicine
- 2. University of California - Irvine
Description
The data deposited here accompany the manuscript "Phosphorylation at Ser65 modulates ubiquitin conformational dynamics" and include molecular dynamics data for equilibrium molecular dynamics simulations, the string method with swarms of trajectories, and metadynamics calculations for ubiquitin and Ser65-phosphorylated ubiquitin systems. We also include the Python code we used to analyze the data for this manuscript. Detailed file contents are summarized in the README files within various subdirectories.
Files
analyze_string_and_metadynamics.ipynb
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Additional details
Funding
- National Institutes of Health
- Program of Molecular Biophysics 1T32GM135131-01