Training material for the mapping and quantification of single-cell ATAC-seq 10X Datasets

The data provided here is part of the Galaxy Training Network tutorial that analyses 10x genomics single-cell ATAC-seq data from the 10x platform. The original data is from 1k Peripheral Blood Mononuclear Cells (PBMCs) from a Healthy Donor.

Due to time constraints during training, the datasets were subsampled to reads that map to chromosome 21 only.

The 10x Genomics Datasets follow the Creative Commons Attribution license.

There is an additional count matrix in Anndata format created from full datasets.