Published April 18, 2023
| Version 1.0.0
Dataset
Open
Assemblies of 269 Metagenomic Tara Pacific Sequencing Samples - part 2
Authors/Creators
-
Ruscheweyh, Hans-Joachim1
-
Veglia, Alex2
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Bistolas, Kalia3
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Voolstra, Christian4
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Hume, Benjamin4
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Planes, Serge5
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Allemand, Denis6
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Boissin, Emilie5
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Wincker, Patrick7
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Poulain, Julie7
- Moulin, Clementine8
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Bourdin, Guillaume9
- Iwankow, Guillaume5
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Romac, Sarah10
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Agostini, Sylvain11
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Banaigs, Bernard5
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Boss, Emmanuel9
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Bowler, Chris12
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de Vargas, Colomban10
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Douville, Eric13
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Flores, Michel14
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Forcioli, Didier15
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Furla, Paola15
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Galand, Pierre16
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Gilson, Eric15
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Lombard, Fabien17
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Pesant, Stephane18
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Reynaud, Stephanie6
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Sunagawa, Shinichi19
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Thomas, Olivier20
- Trouble, Romain8
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Zoccola, Didier6
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Correa, Adrienne2
-
Thurber, Rebecca3
- 1. Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland
- 2. BioSciences Department, Rice University, Houston, TX, USA
- 3. Microbiology Department, Oregon State University, Corvallis, OR, USA
- 4. Department of Biology, University of Konstanz, Konstanz, Germany
- 5. PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860 Perpignan Cedex, France
- 6. Centre Scientifique de Monaco, 8 Quai Antoine Ier, MC-98000, Principality of Monaco
- 7. Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
- 8. Fondation Tara Océan, Base Tara, 8 rue de Prague, 75 012 Paris, France
- 9. School of Marine Sciences, University of Maine, Orono, ME, USA
- 10. Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, Roscoff, France
- 11. Shimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan
- 12. Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France
- 13. Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, F-91191 Gif-sur-Yvette, France
- 14. Weizmann Institute of Science, Department of Earth and Planetary Sciences, 76100 Rehovot, Israel
- 15. Université Côte d'Azur, CNRS, INSERM, IRCAN, Medical School, Nice, France and Department of Medical Genetics, CHU of Nice, France
- 16. Sorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, 66650 Banyuls sur mer, France
- 17. Sorbonne Université, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, F-06230 Villefranche-sur-Mer, France
- 18. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK
- 19. Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, Vladimir-Prelog-Weg 4, ETH Zürich, CH-8093 Zürich, Switzerland
- 20. Marine Biodiscovery Laboratory, School of Chemistry and Ryan Institute, National University of Ireland, Galway, Ireland
Description
This data is the result of the metagenomic assembly of 269 sequencing samples reflecting a first subset of the Tara Pacific metagenomes. Assemblies are used in
- Part 1
Notes
Special thanks to the Tara Ocean Foundation, the R/V Tara crew and the Tara Pacific Expedition Participants (https://doi.org/10.5281/zenodo.3777760). We are keen to thank the commitment of the following institutions for their financial and scientific support that made this unique Tara Pacific Expedition possible: CNRS, PSL, CSM, EPHE, Genoscope, CEA, Inserm, Université Côte d'Azur, ANR, agnès b., UNESCO-IOC, the Veolia Foundation, the Prince Albert II de Monaco Foundation, Région Bretagne, Billerudkorsnas, AmerisourceBergen Company, Lorient Agglomération, Oceans by Disney, L'Oréal, Biotherm, France Collectivités, Fonds Français pour l'Environnement Mondial (FFEM), Etienne Bourgois, and the Tara Ocean Foundation teams. Tara Pacific would not exist without the continuous support of the participating institutes. The authors also particularly thank Serge Planes, Denis Allemand, and the Tara Pacific consortium.
Files
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