Published April 17, 2023
| Version v1
Dataset
Open
Transcriptomics and proteomics reveal distinct biology for lymph node metastases and tumor deposits in colorectal cancer
Authors/Creators
- 1. Department of pathology, Radboud University Medical Center, Nijmegen, The Netherlands
- 2. Wolfson Wohl Cancer Research Center, School of Cancer Sciences, University of Glasgow, United Kingdom; Academic Unit of Surgery, Glasgow Royal Infirmary, University of Glasgow, United Kingdom
- 3. Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, The Netherlands
- 4. Department of surgery, Radboud University Medical Center, Nijmegen, The Netherlands
- 5. Department of surgery, Netherlands Cancer Institute, Amsterdam, The Netherlands
- 6. Department of Medical Biosciences, Research Institute for Medical Innovation, Radboud University Medical Centre, Nijmegen, The Netherlands
- 7. Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, The Netherlands; The Netherlands Cancer Institute, Amsterdam, The Netherlands
Description
Spatial transcriptomic data (counts_DSP_afterQC_normalisation.csv) derived using the Nanostring GeoMx digital spatial profiler platform to analyse tumor deposits and lymph node metastases from 10 patients with colorectal cancer. 264 AOIs of cancer transcriptome atlas data. Normalised using Q3 normalisation, for further information on methods see associated publication.