Published April 13, 2023 | Version 1.0.0
Software Open

vRAPID: Virus Reference-based Assembly Pipeline and IDentification

Authors/Creators

  • 1. Icahn School of Medicine at Mount Sinai
  • 2. Queensland Health

Description

The Virus Reference-based Assembly Pipeline and IDentification (vRAPID) tool runs the assembly, consensus calling, and annotation of viral pathogen genomes.

vRAPID relies on data structures and naming conventions used by the Center for Research on Influenza Pathogenesis and Transmission (CRIPT) and the Mount Sinai Pathogen Surveillance Program (MS-PSP) at the Icahn School of Medicine at Mount Sinai. vRAPID is an expansion of the COVID_pipe pipeline that was written by Mitchell Sullivan in the Bakel Lab. Complete documentation is available here.

Files

vRAPID-master.zip

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Additional details

Related works

Is derived from
Software documentation: https://github.com/BakelLab/vRAPID (URL)

References