scNCL transfers labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization

Data used in our manuscript.

'scNCL_data' folder contains gene expression data (with protein) and gene activitiy data (with protein).

'GLUE_data' folder contains gene expression data and raw chromatin accessibility data. 

'HFA-resampling' folder contains multiple independent sampling of HFA-subset dataset.

'Accuray on HFA-subsets.xlsx' file contains accuray results of all compared methods on HFA-subsets datasets.