Published April 17, 2023
| Version v1
Dataset
Open
Supporting data for Comparison of Oxford Nanopore and Illumina sequencing for SARS-CoV-2 variant monitoring in wastewater
Authors/Creators
- 1. Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, Barcelona, Spain. Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, Santa Coloma de Gramenet, Spain.
- 2. Liver Unit, Liver Diseases - Viral Hepatitis, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Campus, Barcelona, Spain. Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Madrid, Spain.
- 3. Catalan Institute for Water Research (ICRA), Girona, Spain. Universitat de Girona, Girona, Spain.
- 4. Centre for Omic Sciences (COS), Joint Unit Universitat Rovira i Virgili-EURECAT. Unique Scientific and Technical Infrastructures (ICTS), Reus, Spain.
- 5. Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, Barcelona, Spain. Botany and Microbiology Department, Science College, King Saud University, Riyadh, Saudi Arabia.
Description
This dataset contains the FASTQ files used in the paper Comparison of Oxford Nanopore and Illumina sequencing for SARS-CoV-2 variant monitoring in wastewater.
The FASTQ files are classified in 2 different folders: MinION and MiSeq. Inside the MinION folder, there are two more folders, one for the R9.4.1 flow cell data and the other for the R10.4.1 flow cell data.
Twist synthetic RNA mixtures are named as mix1, mix2, etc.
Twist synthetic RNA corresponding to the Wuhan sequence is named as mix11_WH
Wastewater samples are named as WWTP_1, WWTP_2, etc.
Files
Files
(11.4 GB)
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md5:7018efc91ad99b64bf6e4f771a9079d4
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11.4 GB | Download |