Published March 29, 2023 | Version v1

Data from: Is a community state reachable, and why?, and Coexistence and collapse: an experimental investigation of the persistent communities of a protist species pool

  • 1. Botany and Modelling of Plant Architecture and Vegetation (AMAP)
  • 2. Computer Science, Integrative Biology and Complex Systems (IBISC)
  • 3. University of Sheffield
  • 4. University of York

Description

Deterministic models have difficulties to take into account stochasticity during community assembly. As a tool to circumvent this problem, we present a qualitative discreteevent model, where consequences of interspecific interactions are described as rules. This model provides a map of all possible future dynamics for a given system, which allows to exhaustively describe the possible pathways during an assembly process. Such a description does not rely on species traits details and is insensitive to stochastic effects. This allows to show that subsets of species are sometimes impossible to reach starting from larger sets of species, and therefore to question the reachability of community states during the system’s dynamics. Applying the model to an experimental dataset studying the collapse of protist communities, we obtain a very good theory-experiment agreement. We finally discuss what the notion of reachability can bring to community assembly.

Notes

This repository contains the dataset from the article A. Weatherby et al. (1998) Coexistence and collapse: an experimental investigation of the persistent communities of a protist species pool* Journal of Animal Ecology, 67, 554–566. Part of this dataset was presented in the original article ; a new analysis was performed in the article M. de Goër de Herve et al. (2023) Is a community state reachable, and why?, which uses a more extensive part of the data. The whole dataset is presented here, as well as the code used to perform the model-data comparison presented in M. de Goër de Herve et al.

Files

Protist community collapse.zip

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Additional details

Funding

UK Research and Innovation
Natural Environment Research Council and Marlan Maritime Technologies Limited 509884
European Commission
LEAP-AGRI - A long term EU-Africa research and innovation partnership on food and nutrition security and sustainable agriculture 727715

References

  • A. Weatherby et al. (1998) Coexistence and collapse: an experimental investigation of the persistent communities of a protist species pool, Journal of Animal Ecology, 67, 554–566