Published March 20, 2023
| Version 1.0.0
Dataset
Open
Single-cell RNA-seq count data used in differential expression benchmark study
Authors/Creators
- 1. St. Anna Children's Cancer Research Institute (CCRI)
Description
Count matrices and meta data tables from simulated and real world immune cell single-cell RNA-seq experiments.
All files are in Rds format and can be read by R using "readRDS()".
- 10k_*: These files contain a filtered version of the 10k Human PBMCs, 3' v3.1 data published by 10x Genomics
- blueprint_data.Rds: This file contains the bulk RNA-seq data downloaded from BLUEPRINT
- blueprint_immune_comparisons.Rds: Results from running three bulk RNA-seq differential expression methods
- sim_data*: These files contain the count matrices and meta data tables for the simulated data. Every file contains a list of 13 replicates.
Files
Files
(600.7 MB)
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md5:6d629430593dd4082bc0d4f69f05e981
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49.2 MB | Download |
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md5:6f07cbdd9ec7427955f641ce0c2e5f69
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442.2 kB | Download |
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md5:e261587e936228a9977cfbe0f2110fa3
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3.0 MB | Download |
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md5:e19288f40d4639b46ad4698a88704ec8
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725.2 kB | Download |
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md5:15053134c3e298dbec75553a6c8b982d
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37.2 MB | Download |
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md5:ba3db813fceaefffa95f8096f5ad3617
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178.8 MB | Download |
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md5:4a10368ed4237e3f1273912500b49807
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8.7 MB | Download |
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md5:64d714479a431619b1cea9a7ff4fe9c0
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322.7 MB | Download |