Software Open Access

BridgeDb

Awasthi, Manas; Basaric, Helena; Conklin, Bruce R.; Evelo, Chris T.; Gao, Jianjiong; Gray, Alasdair; Hanspers, Kristina; Isaac, Ho; Kelder, Thomas; Kerber, Randy; Kutmon, Martina; Mélius, Jonathan; Nunes, Nuno; Pico, Alexander R.; Riutta, Anders; Slenter, Denise; Soiland-Reyes, Stian; Van Iersel, Martijn P.; Willighagen, Egon L.

Minor release that a few NullPointerExceptions in the QC tool, migrated the VoID tool into a separate org.bridgedb.tools.voidtool module, add Prymnesium parvum and Skeletonema marinoi as new species, and removes to plugin for the discontinued Taverna.

The below examples assume you need just org.bridgedb.bio, and you can use it as template and modify to add other modules.

For Maven:

<dependencies>
    <dependency>
        <groupId>org.bridgedb</groupId>
        <artifactId>org.bridgedb.bio</artifactId>
        <version>3.0.21</version>
    </dependency>
</dependencies>

For Gradle:

compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.21'

For Ivy:

<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.21"/>

For Buildr:

'org.bridgedb:org.bridgedb.bio:jar:3.0.21'

Full Changelog: https://github.com/bridgedb/BridgeDb/compare/release_3.0.20...release_3.0.21

If you use this software, please cite it as below.
Files (8.3 MB)
Name Size
bridgedb/BridgeDb-release_3.0.21.zip
md5:4fae182af6ea5205f444b44db42e9434 		8.3 MB Download
2,093
141
views
downloads
All versions This version
Views 2,0934
Downloads 1410
Data volume 2.4 GB0 Bytes
Unique views 1,8362
Unique downloads 1170
More info on how stats are collected.
Available in Indexed in
Publication date:
March 18, 2023
DOI:
10.5281/zenodo.7748904

Zenodo DOI Badge

DOI 

10.5281/zenodo.7748904

Markdown 

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7748904.svg)](https://doi.org/10.5281/zenodo.7748904)

reStructedText 

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.7748904.svg
   :target: https://doi.org/10.5281/zenodo.7748904

HTML 

<a href="https://doi.org/10.5281/zenodo.7748904"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.7748904.svg" alt="DOI"></a>

Image URL 

https://zenodo.org/badge/DOI/10.5281/zenodo.7748904.svg

Target URL 

https://doi.org/10.5281/zenodo.7748904

Keyword(s):
identifier mapping Genes Proteins Metabolites Biological data
Related identifiers:
Supplement to
Communities:
License (for files):
Apache License 2.0

Versions

Version 3.0.21 10.5281/zenodo.7748904 Mar 18, 2023
Version 3.0.20 10.5281/zenodo.7660676 Feb 21, 2023
Version 3.0.19 10.5281/zenodo.7622867 Feb 8, 2023
Version 3.0.18 10.5281/zenodo.7414409 Dec 8, 2022
Version 3.0.17 10.5281/zenodo.7414384 Aug 10, 2022
View all 34 versions
Cite all versions? You can cite all versions by using the DOI 10.5281/zenodo.593034. This DOI represents all versions, and will always resolve to the latest one. Read more.

Share

Cite as

Export