Published March 19, 2023
| Version v1.0
Dataset
Open
Graph construction method impacts variation representation and analyses in a bovine super-pangenome
Description
Pangenomes for minigraph, pggb, and cactus containing assemblies from
- Hereford (cattle reference genome)
- Highland
- Brown Swiss
- Angus
- Simmental
- Original Braunvieh
- Piedmontese
- Nellore
- Brahman
- Yak
- Bison
- Gaur
Also contains the genomic region classifications for the ARS-UCD1.2 reference genome for
- Satellites
- Tandem repeats
- Low mappability
- Repetitive regions
- Normal (everything else)