Published February 21, 2023 | Version 1
Dataset Open

Genetic variation in cis-regulatory domains suggests cell type-specific regulatory mechanisms in immunity

Creators

  • 1. University of Geneva
  • 2. University of Lausanne

Description

1- workflow for data analysis and figures generation

Notes

Publicly available code used in this study : BCFtools v1.8 (based on HTSlib v1.8) PLINK v1.90b5 R v3.5.1 HOMER v4.9 (webpage: http://homer.ucsd.edu/homer/ngs/peaks.html) Clomics v1.0 (https://github.com/odelaneau/clomics) QTLTools v1.3.1 (https://qtltools.github.io/qtltools) GOrilla for identifying and visualizing enriched GO terms (http://cbl-gorilla.cs.technion.ac.il/) code in open access: https://github.com/dianamatata/CRD_immune_cells

Files

CRD_immune_cells-main.zip

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Additional details

Funding

SYSCID – A Systems medicine approach to chronic inflammatory disease 733100
European Commission