Published January 31, 2023 | Version v1

Sequencing data for "Identifying and tracking mobile elements..." by van Dijk et al. (2023)

Authors/Creators

  • 1. Max Planck for Evolutionary Biology

Description

The dataset contains the following directories:

All_raw_MAGs: all cross-assembled MAGs per community, with a text file for their BAT annotation results. Cross-assembly was done by combining all time points. 
Candidatus_Saccharibacterium_MAGs: identified nanobacterium MAGs from various communities. 
Cellvibrio_MAGs: identified cellvibrio spp. across communities. 
Cellvibrio_Plasmids: Cp plasmids belonging to Cellvibrio (C1) which transferred from communities 8 to 4, 6, 9, and 10 (in horizontal communities)
Interactive_Dataset: HTML5 (Plotly) graphs to explore all xenotypic sequences and MAG abundance plots
Rscript_mock_data: R script used to design the mock data for the benchmark set. 

And a single spreadsheet (Xenoseq_mastersheet.xlsx, Supplementary Table 1) of data discussed in the main text.

Files

Files (1.2 GB)

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md5:390feda67bec44d93c1737fc8d28f4a3
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