Published January 29, 2023
| Version v1
Dataset
Open
RawHash - d3_yeast_r94 (reads.fasta file)
Description
Basecalled sequences as extracted from the FAST5 files following NCBI link:
https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_browser&acc=SRR8648503&display=metadata
The reads are extracted using the "Fast5-to-Fastq" tool (https://github.com/rrwick/Fast5-to-Fastq) with the following command:
Fast5-to-Fastq/fast5_to_fastq.py fast5_files/ | awk 'BEGIN{line = 0}{line++; if(line %4 == 1){print ">"substr($1,2,36)}else if(line % 4 == 2){print $0}}' > reads.fasta
Files
Files
(382.2 MB)
| Name | Size | |
|---|---|---|
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md5:57cdc30c6f96a42a78d5074548efb55a
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382.2 MB | Download |