Published January 29, 2023 | Version v1

RawHash - d3_yeast_r94 (reads.fasta file)

Authors/Creators

  • 1. Firtina

Description

Basecalled sequences as extracted from the FAST5 files following NCBI link:

https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_browser&acc=SRR8648503&display=metadata

The reads are extracted using the "Fast5-to-Fastq" tool (https://github.com/rrwick/Fast5-to-Fastq) with the following command:

Fast5-to-Fastq/fast5_to_fastq.py fast5_files/ | awk 'BEGIN{line = 0}{line++; if(line %4 == 1){print ">"substr($1,2,36)}else if(line % 4 == 2){print $0}}' > reads.fasta

 

Files

Files (382.2 MB)

Name Size
md5:57cdc30c6f96a42a78d5074548efb55a
382.2 MB Download