Published January 24, 2023 | Version v3
Dataset Open

Dataset incr1 - NGS-based S. aureus typing and outbreak analysis in clinical microbiology laboratories: lessons learned from a Swiss-wide proficiency test

Authors/Creators

  • 1. University of Geneva
  • 2. University Hospital of Lausanne
  • 3. University of Bern
  • 4. University Hospital of Basel
  • 5. University of Zurich

Contributors

Project leader:

  • 1. University Hospital Basel
  • 2. University of Geneva
  • 3. University Hospital of Lausanne
  • 4. University of Bern
  • 5. University of Zurich
  • 6. Swiss Institute of Bioinformatics

Description

Supplemental material of article "NGS-based S. aureus typing and outbreak analysis in clinical microbiology laboratories: lessons learned from a Swiss-wide proficiency test" by D. Dylus et al. Please refer to Methods therein.

FASTQ datasets for increment 1. 

Files

Files (12.8 GB)

Name Size
md5:9a78ce40ecb2b85b7b622da8fed11257
12.8 GB Download

Additional details

References

  • Dylus D, Pillonel T, Opota O, Wüthrich D, Seth-Smith HMB, Egli A, Leo S, Lazarevic V, Schrenzel J, Laurent S, Bertelli C, Blanc DS, Neuenschwander S, Ramette A, Falquet L, Imkamp F, Keller PM, Kahles A, Oberhaensli S, Barbié V, Dessimoz C, Greub G, Lebrand A. NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test. Front Microbiol. 2020 Nov 24;11:591093. doi: 10.3389/fmicb.2020.591093. PMID: 33424794; PMCID: PMC7793906.