Genetics and Genomics

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Published January 5, 2023 | Version 1.0.0
Dataset Open

ODNA Data and Analysis Source Code

Authors/Creators

  • 1. Department of Mathematics and Computer Science, University of Marburg, 35032 Marburg, Germany

Description

This upload contains the analysis source code and processed data for developing the software ODNA, including the machine learning pipeline. ODNA is software for identifying organellar DNA sequences from genome assemblies using genome annotation derived from the Modular Open-Source Genome Annotator (MOSGA).

Files

ODNA-DATA.zip

Files (13.0 GB)

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md5:150cb74186a9e9f4d80bda4510c02868
13.0 GB Preview Download

Additional details

Related works

Is supplemented by
Software: https://gitlab.com/mosga/odna (URL)
References
Software: 10.5281/zenodo.7322857 (DOI)
Journal article: 10.1093/bioinformatics/btaa1003 (DOI)
Journal article: 10.1016/j.csbj.2021.09.024 (DOI)

References

  • Roman Martin, Thomas Hackl, Georges Hattab, Matthias Fischer, Dominik Heider (2020). MOSGA: Modular Open-Source Genome Annotator. Bioinformatics. 36(22-23). 5514–5515
  • Roman Martin, Hagen Dreßler, Georges Hattab, Thomas Hackl, Matthias Fischer, Dominik Heider (2021). MOSGA 2: Comparative genomics and validation tools. Computational and Structural Biotechnology Journal. 19. 5504-5509