Published October 24, 2022 | Version 0.0.2
Dataset Open

celegans scRNA data set objects

Authors/Creators

  • 1. Max Planck Institute for Evolutionary Biology

Description

Combined and converted scRNA data from (Packer and Zhu et al. 2019), see a detailed description of the study here: https://www.science.org/doi/full/10.1126/science.aax1971

Data were downloaded from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126954 converted into Seurat object and converted into loom and AnnData (h5ad) files to be able to analyse with e.g. python scanpy package.

If you use this data, please cite Packer and Zhu et al. 2019.

Files

Files (2.3 GB)

Name Size
md5:bcc0c311826766d7f9de1d6c01856027
1.0 GB Download
md5:bff10feda66bf62d998ca384bafcf49b
884.7 MB Download
md5:2fdd7a632f3d994f3fa263ca5a435393
378.8 MB Download
md5:c8f18d807d268d3cdd43bfea51dd44b4
30.5 MB Download
md5:2f359b159cecbec68c9ef3133e6a15b5
21.8 MB Download

Additional details

References

  • Packer, J.S., Zhu, Q., Huynh, C., Sivaramakrishnan, P., Preston, E., Dueck, H., Stefanik, D., Tan, K., Trapnell, C., Kim, J. and Waterston, R.H., 2019. A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution. Science, 365(6459), p.eaax1971.
  • Satija, R., Farrell, J.A., Gennert, D., Schier, A.F. and Regev, A., 2015. Spatial reconstruction of single-cell gene expression data. Nature biotechnology, 33(5), pp.495-502.
  • Wolf, F.A., Angerer, P. and Theis, F.J., 2018. SCANPY: large-scale single-cell gene expression data analysis. Genome biology, 19(1), pp.1-5.