Published March 22, 2023
| Version v2
Dataset
Open
Phylogenetic profile of 100 annotated low complexity proteins against the Uniprot Reference Proteome dataset
Authors/Creators
- 1. BCPL, Chemical Process & Energy Resources Institute, Centre for Research & Technology Hellas (CERTH)
Contributors
Contact person:
Project member (3):
- 1. BCPL, Chemical Process & Energy Resources Institute, Centre for Research & Technology Hellas (CERTH)
- 2. BCCB-AIIA, School of Informatics, Aristotle University of Thessaloniki, Thessaloniki, Greece
Description
Phylogenetic profile of 100 human proteins with characteristic compositional bias, previously recorded by Mier et al (2020) against the Uniprot Reference Proteome, containing a total of 11297 proteomes, excluding viruses. The counts for each protein correspond to homologs found in each proteome.
Detailed description of included columns:
ref_proteome_identifier: The Uniprot Reference Proteome identifier
ncbi_taxid: The NCBI taxonomy ID
species_name: NCBI common name corresponding to taxonomy ID
species_code: internal species code composed of 9 characters
taxonomic domain: E/B/A for Eukaryota/Bacteria/Archaea classification of proteome
Files
cb100-query-20221223.csv
Files
(5.3 MB)
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