Data for "Coordination of bacterial cell wall and outer membrane biosynthesis"

Raw data used in the paper "Coordination of bacterial cell wall and outer membrane biosynthesis" by Katherine R. Hummels, Samuel P. Berry, Zhaoqi Li, Atsushi Taguchi, Joseph K. Min, Suzanne Walker, Debora S. Marks, and Thomas G. Bernhardt. These data were collected with the aim of understanding how the lipopolysaccharide biosynthetic enzyme LpxC is regulated in diverse gram-negative bacteria, particularly Pseudomonas aeruginosa. The dataset contains the following tarred directories:

Experimental data

• Microscopy (microscopy.tar.gz)
• LC-MS/MS (lc-ms_ms.tar.gz)

Covariation analysis

• Multiple sequence alignments (alignments.tar.gz)
• AlphaFold structures (alphafold.tar.gz)
• EVcomplex models and couplings (evcomplex.tar.gz)
• Phylogenetic trees (trees.tar.gz)

For more detailed methods and file descriptions, please see README.md. Associated code for analysis can be found at https://github.com/samberry19/evcomplex-interaction-scoring.