Published November 15, 2021 | Version v1

Murine brain organoids developmental profiling

Description

The dataset includes the RNA sequencing data generated for the study entitled "Murine cerebral organoids develop network of functional neurons and hippocampal brain region identity" by Ciarpella et al. Starting from mouse neuronal stem cells, we generate organoids to recapitulate the hippocampal structure as new platform for modeling diseases, for drug screening and for organ transplantation in regenerative medicine. Performing RNA sequencing in organoids at different stage of proliferation and maturation, we obtained a measure of the cellular diversity within the organoids, the degree of differentiation and the affinity to hippocampus or cortex tissue (reference samples). 

Notes

Project also funded by Fondazione Telethon–Italy (Grant Number GSP20004_PAsMCT8006); Italian patient association la Colonna and GALM and University of Verona (Grant Number DDSP-FUR-6616); University of Milan (Grant Number BIOMETRA15-6-3003005-1 and PSR2018_RIVA_BIFARI); Fondazione Telethon–Italy (Grant Number GGP19250)

Files

HERMES_meta_RNAseq.pdf

Files (17.9 GB)

Name Size
md5:8603632cdb6c1a187b681f1c5f5cef06
282.5 kB Preview Download
md5:ee7add56d972c2296f20190f17732915
753.1 MB Download
md5:05020ec2ecfd6df55453deeca0bc8e6d
795.2 MB Download
md5:66ce99a5495f2b4acf9103f44e9b3f70
840.4 MB Download
md5:3872194b157ed89e14c66898853c6bab
848.5 MB Download
md5:eb5b4db2cacfe1745997082749c1158e
897.7 MB Download
md5:5f798355f12ffee7a532e1dd3f0f330a
864.2 MB Download
md5:eedb0c83f621e4e1f05033189542126a
977.2 MB Download
md5:cdeb52bd2e0c77d603acddf8c8320d76
832.3 MB Download
md5:9a9fb25705d1df8de48c20b9d743da28
879.5 MB Download
md5:cda4d2255e75630943dce080706930ad
700.7 MB Download
md5:2be4fc1e36d8033dd85c48cbeccf663c
816.1 MB Download
md5:06b46ce4669a0cc016b9a9bac7622216
773.4 MB Download
md5:6f8d893b054fa427d52441fa984215f3
886.8 MB Download
md5:b70d2e95b84362ab6d7e93629b9b69ea
875.9 MB Download
md5:52a9727e7e411e52076a903e130e9bc1
1.0 GB Download
md5:f7f819bab87b0e0be7b2660083d2184f
804.9 MB Download
md5:e47fe5cc6c16e0a4f7b498fb141c28a9
927.9 MB Download
md5:179f1d4735d37411ac59619139d0de59
796.2 MB Download
md5:a60b18e079fa5cda012970168c087b18
953.1 MB Download
md5:f8ba7a51085f94d0e06a2269ce095193
866.6 MB Download
md5:2b356415a2e2c1e70b50c368f196ecf7
804.3 MB Download

Additional details

Related works

Is new version of
Dataset: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA778927 (URL)
Is published in
Journal article: 10.1016/j.isci.2021.103438 (DOI)

Funding

European Commission
HERMES - Hybrid Enhanced Regenerative Medicine Systems 824164