aniMotum: fit latent variable movement models to animal tracking data for location quality control and behavioural inference
Authors/Creators
- 1. Macquarie University
- 2. CSIRO Oceans and Atmosphere
- 3. Durham University
Description
Fits continuous-time random walk, correlated random walk and move persistence state-space models for location estimation and behavioural inference from animal tracking data ('Argos', 'GPS', processed light-level 'geolocation', and others). Template Model Builder ('TMB') is used for fast random-effects estimation. The 'Argos' data can be: (older) least squares-based locations; (newer) Kalman filter-based locations with error ellipse information; or a mixture of both. The models estimate two sets of location states corresponding to: 1) each observation, which are (usually) irregularly timed; and 2) user-specified time intervals (regular or irregular). A track re-routing function is provided to adjust location estimates for known movement barriers. Track simulation functions are provided. Latent variable models are also provided to estimate move persistence from track data not requiring state-space model filtering.
Files
aniMotum_1.1.zip
Files
(11.4 MB)
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