Published June 13, 2022
| Version 1.1
Dataset
Open
NPOmix 1: antiSMASH results from 1,040 PoDP paired samples
Authors/Creators
- Leao, Tiago F1
- Wang, Mingxun2
- Silva, Ricardo1
- Gurevich, Alexey3
- Bauermeister, Anelize2
- Gomes, Paulo WP2
- Brejnrod, Asker2
- Glukhov, Evgenia2
- Aron, Allegra T2
- Louwen, Joris JR4
- Kim, Hyun Woo5
- Reher, Raphael6
- Fiore, Marli F1
- van der Hooft, Justin JJ4
- Gerwick, Lena2
- Gerwick, William H2
- Bandeira, Nuno2
- Dorrestein, Pieter C2
- 1. University of São Paulo
- 2. University of California San Diego
- 3. St. Petersburg State University
- 4. Wageningen University
- 5. Dongguk University
- 6. University of Marburg
Description
Dataset used in the NPOmix validation (described in the publication) that includes antiSMASH results from 1,040 PoDP paired samples and 21 MGF metabolite spectra with known BGCs for testing. The input for antiSMASH were FASTA genomes from NCBI that are listed at the PoDP database (https://pairedomicsdata.bioinformatics.nl). We removed all files from the antiSMASH output folder but the GenBank (.gbk) files for the BGCs. The NPOmix publication can be found here: https://academic.oup.com/pnasnexus/advance-article/doi/10.1093/pnasnexus/pgac257/6847575. This publication used the 21 MGFs for validation plus brasilicard A and palmyramide A (to be included soon).
Files
21_mgfs_test1.zip
Files
(244.4 MB)
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