Published May 9, 2023
| Version v1
Dataset
Open
[Data S1] Microbiota dictate T cell clonal selection to augment graft-vs-host disease after stem cell transplantation
Authors/Creators
-
Yeh, Albert C.
- Koyama, Motoko
- Waltner, Olivia
- Minnie, Simone A.
- Boiko, Julie R.
- Shabaneh, Tamer
- Takahashi, Shuichiro
- Ensbey, Kathleen S.
- Schmidt, Christine R.
- Legg, Samuel R.W.
- Sekiguchi, Tomoko
- Nelson, Ethan
- Stevens, Andrew R.
- Bhise, Shruti S.
- Goodpaster, Tracy
- Chakka, Saranya
- Furlan, Scott N.
- Markey, Kate A.
- Bleakley, Marie E.
- Elson, Charles O.
- Bradley, Philip H.
- Hill, Geoffrey R.
Description
Data S1. ALICE hits for all recipient pairs amongst B6 to B6D2F1 transplants with or without antibiotic exposure and 900cGy vs. 1300cGy TBI conditioning. For each recipient pair (12 mice total, 66 pairs for spleen; 15 pairs for SILP analysis), all ALICE hits generated as described in methods.
Notes
This file contains ALICE output files referred to as Data S1. Antigen-specific lymphocyte identification by clustering of expanded sequences (ALICE) was performed as described in Pogorelyy et al (13), using publicly available code (https://github.com/pogorely/ALICE, last accessed 9/16/2021). Each analysis was run over 100 iterations consisting of 1x106 sequences/iteration for generative probability estimation simulation for each VJ class, as recommended in the original manuscript.
Files
TCR recips - 1906Tgut_G10_11 (ALICE).csv
Files
(89.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:ae8c57be9887402ac0a80df9bb38db66
|
1.1 MB | Preview Download |
|
md5:46a593f31f7d3bb3397760794d1e7c38
|
1.4 MB | Preview Download |
|
md5:565bf2e2f94c9a10e5cf6f093d2bc2cf
|
1.1 MB | Preview Download |
|
md5:6fe018b9427f10b90a7762fb3710ea12
|
1.5 MB | Preview Download |
|
md5:5ea01fabee659dca19c2cd215fc874eb
|
1.3 MB | Preview Download |
|
md5:ec01f9d21784747c61b8a3ac0ca97392
|
1.5 MB | Preview Download |
|
md5:45c8f6601c5ff0982c235b3f3b52f28e
|
1.7 MB | Preview Download |
|
md5:6eaa798bd0fb627e476ad916a955ce4b
|
1.5 MB | Preview Download |
|
md5:4fcded29b04224c883b2a1e033eb38c5
|
1.6 MB | Preview Download |
|
md5:ab2c2c58602d2ae07aed38ca05821836
|
1.3 MB | Preview Download |
|
md5:4614412fe2c6937c449f5461982254f8
|
1.6 MB | Preview Download |
|
md5:f536a7dddd3c25f5753c771f283cccf1
|
1.5 MB | Preview Download |
|
md5:9ff954ef6c30aab9dd7c7c2d5a60811a
|
1.3 MB | Preview Download |
|
md5:52b2a53f391890e1e851f4d2e5ae622f
|
1.1 MB | Preview Download |
|
md5:ce86b1c816ff6598726175496959f449
|
1.3 MB | Preview Download |
|
md5:c639404bd7a167fcca5bd844019da8d4
|
1.0 MB | Preview Download |
|
md5:d707499a32baef40ef4d429e021dd51e
|
1.2 MB | Preview Download |
|
md5:5e4f833036ce4b96d7ff4874f88326eb
|
977.7 kB | Preview Download |
|
md5:be0cab121861ef6ebf905264eb4513d7
|
881.4 kB | Preview Download |
|
md5:53cd78bb664631826d7fc289a951ab03
|
695.5 kB | Preview Download |
|
md5:1f266286a92703dd789d8860b2a354b1
|
797.5 kB | Preview Download |
|
md5:bdb577a9f23d82091bad108b61c09a32
|
651.9 kB | Preview Download |
|
md5:daef34c8490556335f65e154c578d634
|
979.7 kB | Preview Download |
|
md5:e9f8eebf770da710e295004d1cb91b7c
|
830.4 kB | Preview Download |
|
md5:e980ffe5c16c4fc493e9b5bafbfea4d6
|
793.9 kB | Preview Download |
|
md5:e7d92b83d79e653d62a84d1860ed6978
|
655.3 kB | Preview Download |
|
md5:6f20eef7a90754846dd8ec1138446f92
|
1.0 MB | Preview Download |
|
md5:b7cd3478b5c4f9dd1c6f43c06a20528a
|
599.0 kB | Preview Download |
|
md5:5e57bf9aa656e272764927b3ae3484aa
|
934.2 kB | Preview Download |
|
md5:9bc8d37c8c6f2eddb75efca363c627fb
|
996.4 kB | Preview Download |
|
md5:9a8cb5862a7151b2dfacea749b8895ca
|
829.1 kB | Preview Download |
|
md5:c3959200478ac43d58787b37bed9c927
|
930.0 kB | Preview Download |
|
md5:5e28cc483dcf355cb42f413b22681228
|
1.1 MB | Preview Download |
|
md5:4ac55ee207b89dfe33a3efb14662099a
|
960.6 kB | Preview Download |
|
md5:d54f5a3f15ff6359912835c3be8443c9
|
915.7 kB | Preview Download |
|
md5:11bec6f753cfa8fd14031c3ed22a3819
|
774.4 kB | Preview Download |
|
md5:cdb425eda2e38d45ea9c0010ad07e5aa
|
1.1 MB | Preview Download |
|
md5:597c8336b76c864b7e2a949ba9c1f3c1
|
730.0 kB | Preview Download |
|
md5:3ffeacb717ba8801e2b24d59be71bd41
|
1.1 MB | Preview Download |
|
md5:b8a6f87c9c5786bffadb15bb572b908c
|
1.3 MB | Preview Download |
|
md5:9eca987c58fe7d9edffc066513defcc4
|
1.1 MB | Preview Download |
|
md5:0ba84067744cd9ed48d543d897e09fa2
|
1.2 MB | Preview Download |
|
md5:74673dbdfea3baee215f3457d411db3e
|
1.3 MB | Preview Download |
|
md5:e18a760ea7d0febf050048a023870f32
|
1.2 MB | Preview Download |
|
md5:2d2c2516443fddbbf187d78b2d7eaff4
|
1.1 MB | Preview Download |
|
md5:3b81cc354cbe56d576acaa61dd94e4aa
|
1.5 MB | Preview Download |
|
md5:b91308f2d9340d56a47f54a9da963259
|
1.0 MB | Preview Download |
|
md5:9606a24b07fd49c799b46a09803824bf
|
1.4 MB | Preview Download |
|
md5:b67eb4b53034d47bcb97d790d40fc151
|
1.2 MB | Preview Download |
|
md5:884ad0519c93de15bffbe664b496a364
|
1.0 MB | Preview Download |
|
md5:d41fd3ecf1c56f3f18a61a0e7ebf2049
|
1.1 MB | Preview Download |
|
md5:fa1e25c7ed964f1b01aac68c25c900e8
|
1.1 MB | Preview Download |
|
md5:07d5440b4e5f4cf6d302c03a4bd9e4d8
|
952.3 kB | Preview Download |
|
md5:4d554905a162a61914a2d3750885e0d4
|
1.3 MB | Preview Download |
|
md5:6ffd8b42dbe997ccef59ced760ac64f9
|
894.1 kB | Preview Download |
|
md5:ad3cba48b70644646f2217e4a39bcaa1
|
1.2 MB | Preview Download |
|
md5:84f38f1533b969a932cb846c78b7515f
|
1.2 MB | Preview Download |
|
md5:7860778613c4fd2ba108a3c45e74a828
|
969.9 kB | Preview Download |
|
md5:ea8222bd7b54954e32123cd50d7b7fa6
|
1.1 MB | Preview Download |
|
md5:457371fccf97e145cefb67d7fa2ff5e9
|
923.1 kB | Preview Download |
|
md5:c3f530d6ec28b142eaf3b7f7c7072197
|
1.3 MB | Preview Download |
|
md5:1a54c4080005964c83ec25e909fb8075
|
859.3 kB | Preview Download |
|
md5:c7bf592db2c5a6b680ed8a2669794fd9
|
1.2 MB | Preview Download |
|
md5:6f8b2e41474a46f34c35b3784ff698d5
|
990.4 kB | Preview Download |
|
md5:ccbafe06ef62c11cc1ef88d660156f5c
|
806.1 kB | Preview Download |
|
md5:52987085da3c238318bb1258b635716d
|
918.6 kB | Preview Download |
|
md5:e5c4ab774f0bbe5fbeaa337d24763933
|
1.1 MB | Preview Download |
|
md5:8c40071c20922d931a6b9f2eeebcd9ca
|
717.6 kB | Preview Download |
|
md5:93bb81cf1488b9fded80eaa2788d74c6
|
1.1 MB | Preview Download |
|
md5:85a4093b266ce6a1c3238b55be2eb12b
|
1.4 MB | Preview Download |
|
md5:9f08ed28e84da1b430d4a2627e6311b7
|
1.2 MB | Preview Download |
|
md5:921e7948d4c1956f88b6ad015e62e66c
|
1.3 MB | Preview Download |
|
md5:2f61864783881a4356fc653a81fa81e2
|
1.1 MB | Preview Download |
|
md5:24d62b7b29a19639cd5bd8c1e87cb1d3
|
1.5 MB | Preview Download |
|
md5:1dec19bec0b3e88efe5f2fd4f43eb920
|
931.9 kB | Preview Download |
|
md5:eb5f5307859e85a4c47968597c0f5ac2
|
760.0 kB | Preview Download |
|
md5:489b5f11de0c93e1097ff78ffe44f990
|
867.4 kB | Preview Download |
|
md5:99d8c5e7338ea7293dc85a25379ee321
|
1.0 MB | Preview Download |
|
md5:e0678b7d15899acc6a01f6f0ff504f59
|
1.3 MB | Preview Download |
|
md5:40334a553582e1aa411ea5ba654cdc3a
|
1.1 MB | Preview Download |
|
md5:25ac73305a4aefff53517601c4a91fa0
|
1.2 MB | Preview Download |