Integrative genetic analyses illuminates ALS heritability and identifies novel risk genes
Creators
- Megat Salim1
- Mora Natalia2
- Sanogo Jason1
- Roman Olga1
- Catanese Alberto3
- Alami Najwa Ouali3
- Freischmidt Axel3
- Xhuljana Mingaj4
- Hortense De Calbiac4
- Muratet Francois5
- Dirrig-Grosch Sylivie1
- Dieterle Stephane1
- Van Bakel Nick2
- Muller Kathrin3
- Sieverding Kirsten3
- Weishaupt Jochen6
- Munch Andersen Peter7
- Weber Markus8
- Neuwirth Christoph8
- Margelisch Markus8
- Sommacal Andreas8
- Van Eijk Kristel9
- Veldink Jan10
- Lautrettre Geraldine11
- Couratier Phillipe11
- Camuzat Agnes5
- Le Ber Isabelle12
- Grassano Maurizio13
- Chio Adriano13
- Boeckers Tobias3
- Ludolph Albert C3
- Roselli Francesco3
- Yilmazer-Hanke3
- Millechamps Stephanie5
- Kabashi Edor4
- Storkebaum Erik2
- Sellier Chantal1
- Dupuis Luc1
- 1. U1118 INSERM
- 2. Radboud University
- 3. Ulm University
- 4. UMR 1163 INSERM
- 5. Sorbonne University
- 6. University of Medicine Manheim
- 7. Umea University
- 8. Institute for Pathology, St Gallen
- 9. Utrecht of University
- 10. Utrecht University
- 11. CHU Limoges
- 12. Paris Brain Institute ICM
- 13. University of Turin
Description
Amyotrophic lateral sclerosis (ALS), the major adult onset motor neuron disease, has substantial heritability, in part shared with fronto-temporal dementia (FTD). We show here that ALS heritability is enriched in splicing variants and in binding sites of 6 RNA binding proteins including TDP-43 and FUS. A discovery and replication transcriptome wide association study (TWAS) identified 6 loci associated with ALS, 3 in known ALS loci (C9ORF72, SCFD1, SLC9A8) and 3 novel loci including NUP50 encoding for the nucleopore basket protein NUP50 In our meta-analysis of TWAS cohorts, NUP50 common variant was associated with ALS and to decreased expression of NUP50 in the central nervous system. Independently, we further show association of rare variants in NUP50 with ALS risk (P = 3.71.10-03; odds ratio = 3.29; 95%CI, 1.37 to 7.87) in a cohort of 9,390 ALS/FTD patients and 4,594 controls. Cells from one patient carrying a NUP50 frameshift mutation displayed a decreased levels of NUP50. Loss of NUP50 leads to neuronal death in cultured neurons, and motor defects in Drosophila and zebrafish models. Thus, our study identifies alterations in splicing in neurons as a critical pathogenic process in ALS, uncovers several new loci potentially contributing to ALS, and provides genetic evidence linking nuclear pore defects to ALS.
Files
ALSdiscoveryLMM.txt
Files
(2.4 GB)
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21.4 MB | Download |
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19 Bytes | Download |
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19 Bytes | Download |
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19.0 MB | Download |
md5:b0b6db93d2ea9feec32c6dfcaca74d39
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649.1 kB | Download |
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17.7 MB | Download |
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631.8 kB | Download |
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19 Bytes | Download |
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531.4 kB | Download |
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14 Bytes | Download |
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19 Bytes | Download |
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25.2 MB | Download |
md5:eed5c4b57c48a1c7f17e80d5c5e9a06b
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902.7 kB | Download |
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18 Bytes | Download |
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19 Bytes | Download |
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16.8 MB | Download |
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569.7 kB | Download |
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19 Bytes | Download |
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556.3 kB | Download |
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15.9 MB | Download |
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526.0 kB | Download |
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19 Bytes | Download |
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12.0 MB | Download |
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396.0 kB | Download |
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10.7 MB | Download |
md5:cfa48ea821cb8d81e10cf69ee28fe68e
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360.6 kB | Download |
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19 Bytes | Download |
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19 Bytes | Download |
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md5:94c69703e7c3c4176f890812ced81364
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9.4 MB | Download |
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330.6 kB | Download |
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13 Bytes | Download |
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13 Bytes | Download |
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10.3 MB | Download |
md5:a64e6984b18010e94aa82c41958ace7c
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324.3 kB | Download |
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19 Bytes | Download |
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19 Bytes | Download |
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2.1 kB | Download |
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8.8 MB | Download |
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300.8 kB | Download |
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19 Bytes | Download |
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19 Bytes | Download |
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9.3 MB | Download |
md5:3c83231516580e797d642787516a6e17
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315.2 kB | Download |
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18 Bytes | Download |
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18 Bytes | Download |
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2.1 kB | Download |
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7.6 MB | Download |
md5:35fbd64363beaf6289808d5a44ffcbac
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211.5 kB | Download |
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18 Bytes | Download |
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2.1 kB | Download |
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27.2 MB | Download |
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912.2 kB | Download |
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19 Bytes | Download |
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7.2 MB | Download |
md5:948a6300b62b49349895b60304995a29
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271.5 kB | Download |
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12 Bytes | Download |
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19 Bytes | Download |
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2.2 kB | Download |
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4.5 MB | Download |
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141.3 kB | Download |
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12 Bytes | Download |
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12 Bytes | Download |
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4.6 MB | Download |
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152.7 kB | Download |
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11 Bytes | Download |
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2.1 kB | Download |
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22.7 MB | Download |
md5:57d15ba689d22623e40e938606a969e8
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758.6 kB | Download |
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13 Bytes | Download |
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13 Bytes | Download |
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2.1 kB | Download |
md5:c9b29e6352c0a49d795853527691f628
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23.5 MB | Download |
md5:0952b75b88bf8ec63f2456f38ca559d6
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668.9 kB | Download |
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19 Bytes | Download |
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19 Bytes | Download |
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2.1 kB | Download |
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20.3 MB | Download |
md5:56892d2030aab33ca11aa1705570a8fc
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679.3 kB | Download |
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19 Bytes | Download |
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19 Bytes | Download |
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2.1 kB | Download |
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21.2 MB | Download |
md5:411ab8f35d8fbf22b7fcc8d0c5605179
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668.4 kB | Download |
md5:c36ab150ae16fcafd7d481dde527e707
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19 Bytes | Download |
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18 Bytes | Download |
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2.1 kB | Download |
md5:e028f7a12530e0718a5cca831d37516a
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18.9 MB | Download |
md5:3b6b4c76a085396c79d9f5f9f8646877
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601.5 kB | Download |
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18 Bytes | Download |
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13 Bytes | Download |
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2.1 kB | Download |
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17.6 MB | Download |
md5:de02ce3d6966af330dab4f73b6fa6b16
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574.4 kB | Download |
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13 Bytes | Download |
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19 Bytes | Download |
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2.1 kB | Download |
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14.0 MB | Download |
md5:054972163e5c8317622d80bcd5d6ab59
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490.1 kB | Download |
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13 Bytes | Download |
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19 Bytes | Download |
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2.1 kB | Download |
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25.4 MB | Download |
md5:c5c1f0415e11a46888d69585939bc5b0
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953.3 kB | Download |
md5:8c42bbf10f015b0c53c348a2647683d9
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19 Bytes | Download |
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19 Bytes | Download |
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2.1 kB | Download |
md5:4dbe1127755b8cb0604f5964f45834ff
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17.0 MB | Download |
md5:cc7a4cbd4401575e9e51a51c589a80dd
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600.3 kB | Download |
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14 Bytes | Download |
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18 Bytes | Download |
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2.1 kB | Download |
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16.4 MB | Download |
md5:eaa6285c142bdedc57a9aa5b776d9733
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582.9 kB | Download |
md5:83867153322416dda6031cd51f20862e
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18 Bytes | Download |
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13 Bytes | Download |
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2.1 kB | Download |
md5:d167c0e7b6dbc6e1efea1b124806623f
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16.0 MB | Download |
md5:bb45ef0c3215dba31e66c5c4c491ab05
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557.2 kB | Download |
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14 Bytes | Download |
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18 Bytes | Download |
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2.1 kB | Download |
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12.1 MB | Download |
md5:556e8ad326221096fc10433651cf651f
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420.0 kB | Download |
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14 Bytes | Download |
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14 Bytes | Download |
md5:433905ed21b57ffc7b994f41aa8bd511
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2.1 kB | Download |
md5:ba0eab870fd04a1b956815c28951ced1
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10.8 MB | Download |
md5:a862a2d6c82b44b2c03626554503b2f4
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377.6 kB | Download |
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14 Bytes | Download |
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19 Bytes | Download |
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2.1 kB | Download |
md5:6eb25314922cca384970d9f2530ece80
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9.5 MB | Download |
md5:a951309b7ad94e56d1e427f79d203dfe
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342.4 kB | Download |
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13 Bytes | Download |
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13 Bytes | Download |
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2.1 kB | Download |
md5:8e3fdd2c9041f09fd0380704424f79c1
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10.4 MB | Download |
md5:6e947baf7be6b604ea9286473f6df01d
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344.8 kB | Download |
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13 Bytes | Download |
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19 Bytes | Download |
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2.1 kB | Download |
md5:356e515803111c2bb6ca664b7ffb2ff5
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8.9 MB | Download |
md5:20f837843fa0079c284e1f1fd59cf7fd
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313.8 kB | Download |
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18 Bytes | Download |
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18 Bytes | Download |
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2.1 kB | Download |
md5:1f35d64f5174fee4724e5cd7b249d308
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9.4 MB | Download |
md5:45223fddad87a3978123b99c08d5118a
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335.1 kB | Download |
md5:749cb49596e2fe821fda7ac0711ca41c
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19 Bytes | Download |
md5:0b9180de41038f56690b5528c28851ab
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14 Bytes | Download |
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2.1 kB | Download |
md5:0378b5e648e6e3df625e7950df5f9343
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7.7 MB | Download |
md5:953ee602cd15a5286999a7427c605f9b
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219.8 kB | Download |
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13 Bytes | Download |
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12 Bytes | Download |
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2.1 kB | Download |
md5:b13108a237d7fbb6f44990ac8f26f171
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27.4 MB | Download |
md5:4d30b6a6a5ff0e4727663c8c54e39377
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961.6 kB | Download |
md5:c94e8a16371dd32c1e9a77ae1841b412
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18 Bytes | Download |
md5:c2a7b1ed1cd8e334ea6b027217cd3b63
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18 Bytes | Download |
md5:9ace8311cbd7f269f376d4b3a8520411
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2.1 kB | Download |
md5:83cab54e3236c62cea1511755ef325c5
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7.2 MB | Download |
md5:11c3ecc5ef32549b8236d8d6ee92d12e
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285.3 kB | Download |
md5:4d6d8af64e883143e14275a30ca48042
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19 Bytes | Download |
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18 Bytes | Download |
md5:6d015ae371ab15bbf8bbe23e5d261d61
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2.1 kB | Download |
md5:6923a19c4d15e2090276e10831a7d7ed
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4.6 MB | Download |
md5:f576478221e457316fbd979c4f62ca6b
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152.0 kB | Download |
md5:b3611a51fdedaca92d642f6a701b169a
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19 Bytes | Download |
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13 Bytes | Download |
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2.1 kB | Download |
md5:b2eedb3c5975c07d91fb6af7f889cee9
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4.7 MB | Download |
md5:24648774ccd3953f8088ce060681f770
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163.8 kB | Download |
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13 Bytes | Download |
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13 Bytes | Download |
md5:c1a3c30895e1aba0ad674f49046567f3
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2.1 kB | Download |
md5:c596d4e0651900150fbf6441b4e419a6
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22.9 MB | Download |
md5:8c20b4f13665879312671f8f63cda962
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797.9 kB | Download |
md5:ebcd76a87bd1818c06be1f22cad2ec71
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18 Bytes | Download |
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18 Bytes | Download |
md5:887abe08598acdda9c0d7cde230149fa
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2.1 kB | Download |
md5:3b3601dae7ab829419eb002d5f9e0898
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23.6 MB | Download |
md5:5a30e50ad1dc725522f33d11ac686776
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714.1 kB | Download |
md5:1f4c3dda978485ccbec387465ad2f748
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18 Bytes | Download |
md5:d319af69869e75abdd54da4b87764964
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14 Bytes | Download |
md5:53d7dbaef812f0286afb3e0dc377fbef
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2.1 kB | Download |
md5:91261efb771d52027c1de56603a2b6dc
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20.5 MB | Download |
md5:12e555c8a71230c1f2d890ce0d420ae9
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717.0 kB | Download |
md5:96af0030ecd2815ea00854b7357102cb
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18 Bytes | Download |
md5:22759fdbb81f85dfe5e79ed0032aeabf
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18 Bytes | Download |
md5:ae105f99517248b245f3308eac5fbdbb
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2.1 kB | Download |
md5:f423429e2989b6e1b1b06f55a5775c9a
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21.3 MB | Download |
md5:0f797f7b52894ce30749f167d4b04485
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709.8 kB | Download |
md5:6a83b7d82ee08f5e1e006652d84c27a7
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18 Bytes | Download |
md5:8b823cdfc74bac406efa41fcba85423a
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18 Bytes | Download |
md5:9c7caad90178c21714c9025d2e3a4045
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2.1 kB | Download |
md5:f1a556735edaf53bd1cb1b2899d55e24
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19.0 MB | Download |
md5:73610f6eab631d3e1ed2937b974f9485
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631.9 kB | Download |
md5:44d1ee0534eaf652262b3bda73834677
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18 Bytes | Download |
md5:64f2edda660f53e18ce2525dc065626b
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18 Bytes | Download |
md5:3daa282711acbeaf482552f8146f5190
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2.1 kB | Download |
md5:92affcae8bd852afe4bbc99828b3944d
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17.7 MB | Download |
md5:b46f526ebf7f5bffaab22f7ca907abee
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613.8 kB | Download |
md5:329cdd0094fd546934c8f8360e94227c
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18 Bytes | Download |
md5:c7ebfb62be105ee2f5f854996d86bcd9
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18 Bytes | Download |
md5:8d20fcb4f233976bb88902c37b68b4e0
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2.1 kB | Download |
md5:9661c08d85e3251a4cfe80c8d32a6c96
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14.2 MB | Download |
md5:831c1c5cffaf1eed0699df5aed28fe51
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518.8 kB | Download |
md5:222e82c5670e518a6f9979f8abf8b694
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14 Bytes | Download |
md5:4b0746b9c50d7926a588d36f61ac0b10
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14 Bytes | Download |
md5:0cc80c4da2e847488438c0a4be3ac1b8
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2.1 kB | Download |