Published November 30, 2022 | Version v1
Dataset Open

Piper longum transcriptomes generated using transXpress

Authors/Creators

  • 1. Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 16000 Praha 6, Czech Republic

Description

Piper longum transcriptome assemblies created and annotated using transXpress with rnaSPAdes and Trinity assemblers.

Notes

The transcriptome was assembled from reads from SRA with following IDs: SRR10362954, SRR10583928, SRR10362953. Github repository for transXpress: https://github.com/transXpress/transXpress

Files

Files (25.4 GB)

Name Size
md5:1cb3da04db81ae7c21e366b639faae23
12.8 GB Download
md5:a252bf490e27e2b8cb8699b234f80dd1
12.5 GB Download

Additional details

References

  • Fallon et al., transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation, BMC Bioinformatics 2023