Published December 30, 2022 | Version v1
Dataset Open

Dataset - Campylomics, strain-typing metagenomics data

Authors/Creators

  • 1. Luxembourg Institute of Science and Technology

Description

Raw data files for submission: "Metagenomic Strain-Typing Combined with Isolate  
Sequencing Provides Increased Resolution of the Genetic  
Diversity of Campylobacter jejuni Carriage in Wild Birds"

strainestDB.tar.xz files expand to rather large file sizes 6-12Gb

Code for workflow and additional description:
https://git.list.lu/malte.herold/campylomics_pipeline
 

contained:

  • additional tables (e.g. list of reference genomes, metadata), multiqc data
  • 3 Cjejuni strainEST databases
  • Results of the workflow for the 3 databases: strainest_results
  • KMA results (the same for all 3 runs)
  • KMA database
  • sourmash distances of references genomes used for the strainest DBs

some files might still hold references to a 4th database CJC_CGC, not included here.

 

 

Files

Files (699.3 MB)

Name Size
md5:fbbe8e6865c600b9c74424457845c61c
4.4 MB Download
md5:72659c3faccac449d3bac15565617d4a
90.5 MB Download
md5:53b8a50c3f7df78b0b7114e64562fa4f
1.7 MB Download
md5:c0615284c1660d1968694ac63dd95194
1.5 MB Download
md5:f49b18fe2bc27a07641a411052049512
196.4 MB Download
md5:d4b0db9d6927ef03fa1eeab2ab43730d
139.1 MB Download
md5:815941d0832fdfe196f04bb9568c81e9
68.2 MB Download
md5:ac37e2ddaebc48a64a201c5cd6f191b4
197.5 MB Download