A common NFKB1 variant detected through antibody analysis in UK Biobank predicts risk of infection and allergy: Summary statistics - Health records
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Chong, Amanda Y1
- Brenner, Nicole2
- Jimenez-Kaufmann, Andres3
- Cortes, Adrian4
- Hill, Michael5
- Littlejohns, Thomas J6
- Gilchrist, James J7
- Fairfax, Benjamin P8
- Knight, Julian C9
- Hodel, Flavia10
- Fellay, Jacques11
- McVean, Gil4
- Moreno-Estrada, Andres3
- Waterboer, Tim2
- Hill, Adrian V S12
- Mentzer, Alexander J13
- 1. The Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK
- 2. Division of Infections and Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany
- 3. Advanced Genomics Unit, National Laboratory of Genomics for Biodiversity (LANGEBIO), CINVESTAV, Irapuato, Mexico
- 4. Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK
- 5. MRC-Population Health Research Unit, University of Oxford, Oxford, UK
- 6. Nuffield Department of Population Health, University of Oxford, Oxford, UK
- 7. The Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK; Department of Paediatrics, University of Oxford, Oxford, UK
- 8. Department of Oncology, University of Oxford, Oxford, UK
- 9. NIHR Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, Oxford, UK; Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford, UK
- 10. Global Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland
- 11. Global Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland; Precision Medicine Unit, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
- 12. The Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK; The Jenner Institute, University of Oxford, Oxford, UK
- 13. The Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK
Description
Infectious agents contribute significantly to the global burden of diseases, through both acute infection and their chronic sequelae. We leveraged the UK Biobank to identify genetic loci that influence humoral immune response to multiple infections. From 45 genome-wide association studies in 9,611 participants from UK Biobank, we identified NFKB1 as a locus associated with quantitative antibody responses to multiple pathogens including those from the herpes, retro- and polyoma-virus families. An insertion-deletion variant thought to affect NFKB1 expression (rs28362491), was mapped as the likely causal variant. This variant has persisted throughout hominid evolution and could play a key role in regulation of the immune response. Using 121 infection and inflammation related traits in 487,297 UK Biobank participants, we show that the deletion allele was associated with an increased risk of infection from diverse pathogens but had a protective effect against allergic disease. We propose that altered expression of NFKB1, as a result of the deletion, modulates haematopoietic pathways, and likely impacts cell survival, antibody production, and inflammation. Taken together, we show that disruptions to the tightly regulated immune processes may tip the balance between exacerbated immune responses and allergy, or increased risk of infection and impaired resolution of inflammation.
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This dataset contains GWAS summary statistics for infection, inflammation, and allergy related traits in 487,297 individuals
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Additional details
Related works
- Is supplement to
- Preprint: 10.1016/j.ajhg.2023.12.013 (DOI)
- Is supplemented by
- Dataset: 10.5281/zenodo.7347714 (DOI)