Supplementary data files for Manzano-Marín et. al. 2022 "Co-obligate symbioses have repeatedly evolved across aphids, but partner identity and nutritional contributions vary across lineages"
Authors/Creators
- 1. Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
- 2. UMR 1062 Centre de Biologie pour la Gestion des Populations, INRAE, CIRAD, IRD, Montpellier SupAgro, Univ. Montpellier, Montpellier, France
Description
The data set consists of four parts:
1) "FISH_data":TIF-formatted files or unmerged and merged fluorescent channels of FISH microscopies of Anoecia corni and Sipha maydis embryos.
2) "genome_data": GenBank- and FASTA-formatted files of genome assemblies and annotations for Buchnera and co-obligate symbionts.
3) "pathway_data": Presence/absence tables of genes/pseudogenes coding for enzymes involved in the biosynthesis of essential amino acids and B vitamins in ODS spreadsheets and tab-separated value formats. Also, list of genes and pseudogenes of Buchnera genomes.
4) "phylogeny_data": FASTA-formatted nucleotide alignment files, NEXUS-formatted files used for Bayesian phylogenetic reconstruction, and resulting trees. For Buchnera, manually-curated orthologous groups of proteins are also included as flat text files. In addition, the files to infer gene losses by maximum parsimony in Count are included in the "Buchnera_count" folder.
Files
Files
(47.9 MB)
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